Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74854 | Canola | nucleus | 91.06 | 92.35 |
| CDX93271 | Canola | nucleus | 78.95 | 80.63 |
| CDY07001 | Canola | nucleus | 78.05 | 80.04 |
| AT2G39340.1 | Thale cress | nucleus | 77.86 | 77.93 |
| VIT_13s0067g03720.t01 | Wine grape | plastid | 30.39 | 60.71 |
| KRG92986 | Soybean | nucleus | 50.25 | 50.3 |
| KRH36229 | Soybean | nucleus | 49.85 | 49.7 |
| Solyc05g054910.2.1 | Tomato | nucleus | 43.89 | 45.99 |
| VIT_13s0067g03680.t01 | Wine grape | nucleus | 17.87 | 45.23 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.6 | 44.46 |
| Os05t0462600-01 | Rice | mitochondrion | 36.05 | 43.47 |
| HORVU1Hr1G071780.21 | Barley | nucleus | 40.32 | 42.07 |
| TraesCS1D01G286500.8 | Wheat | nucleus | 40.12 | 41.87 |
| TraesCS1B01G297000.5 | Wheat | nucleus | 39.82 | 41.38 |
| TraesCS1A01G287600.8 | Wheat | nucleus | 39.62 | 41.18 |
| OQU87820 | Sorghum | nucleus | 37.84 | 40.66 |
| OQU78144 | Sorghum | nucleus | 39.42 | 39.7 |
| Os01t0836400-02 | Rice | nucleus | 35.95 | 39.61 |
| Zm00001d010546_P003 | Maize | nucleus | 40.02 | 38.97 |
| TraesCS3A01G354400.3 | Wheat | nucleus | 40.12 | 37.41 |
| TraesCS3D01G348300.1 | Wheat | cytosol | 40.02 | 36.4 |
| Zm00001d038393_P012 | Maize | nucleus | 37.04 | 36.32 |
| TraesCS3B01G387400.1 | Wheat | nucleus | 40.02 | 35.95 |
| HORVU1Hr1G029080.1 | Barley | extracellular | 6.06 | 35.88 |
| Zm00001d003061_P001 | Maize | nucleus | 4.37 | 35.77 |
| HORVU3Hr1G087140.16 | Barley | nucleus, plastid | 39.42 | 33.76 |
Protein Annotations
| EnsemblPlants:CDY44640 | EnsemblPlantsGene:GSBRNA2T00080602001 | Gene3D:1.25.40.990 | InterPro:IPR000717 | InterPro:PCI_dom | InterPro:SAC3/GANP/THP3 |
| PANTHER:PTHR12436 | PANTHER:PTHR12436:SF28 | PFAM:PF03399 | PFscan:PS50250 | ProteinID:CDY44640 | ProteinID:CDY44640.1 |
| SEG:seg | UniParc:UPI0004EE8586 | UniProt:A0A078I1B2 | MapMan:16.11.2.1 | : | : |
Description
BnaC04g06220DBnaC04g06220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1B2]
Coordinates
chrLK032597:+:189489..195382
Molecular Weight (calculated)
111256.0 Da
IEP (calculated)
7.719
GRAVY (calculated)
-0.814
Length
1007 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNQGGNTQTV APLDPNSIEK RYGVDGSQVQ ISPYQYSIGS DGSSWTAHTV VDNQVVQNGN YSNSNYYHPP QPTVPNVQET PDNAPFTISS TASGTANVAQ
0101: DYSGYTPYQT SANPPQNYSN TGYSNYYSGY QQQQQQPSQS GAYQNTGAPY QPISSFQNPG SYPAATASYS GTYYNPPDYQ TNGGYQTTNY NNQSAGGCYP
0201: SANYSNQTNT PNQGNYTANP YQNYTPDAAN TYSSTVSTTT PVHYQQNYQQ WPAYYSQTEV PCAPGTEKLS ATSAVSQSFP VPGVTNETPA SNVQPAPSYA
0301: QPWRQETNLS QPSSQQPAAA VSASNDAYWK HQTPNQQAHY PVPPQNHYQS PLETKPLYET PFQGHQRATY PQGMNSQSSV HQAPLGYRQP TQTTPSVDAQ
0401: RVSKVQIPTN PRIASNFPSG YTKMDKGSSA AGLTQSPAYV SVSMPKPKGH ATAVPEPGTL PKSLCGFVER AFARCKDDKE KASCQAALKK VITEARDDGS
0501: LHTRDWDTEP LSTVLNTDMT NTESSSTLIS SLQNKSPTKR PKSRWEPFVE KPFVKSALTF SSGVKFGGWN QQNQNNKKSF ESFQKADAVT DSKPTYSWQN
0601: SKPAYAWQNS AKKSFQRPVK RQRFSGGAAN AIDDEASSDS DKDSTPSAMS FATSAEETKR RDSRSKRFEK VQGHSRRNDI PKPMNVGNLH SRRGTALRLG
0701: EDFDESGCRS VEDIDWNALT VKGTCQEIEK RYFRLTSAPD PSAVRPEDVL EKALLMVQDS QKNYLYKCDQ LKSIRQDLTV QRIHNHLTVK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKILYA EGIEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSKEAK KDEAVRHALS VRGAVTSGNY VMFFRLYKTA PNMNSFLMDL
0901: YVEKMRYKAV TFMSRSCRPT IPVSYIAQVL GFTNTLSEGT GEKETNGVEV CSEWLKAHGA SLIADSNGDM LLDTKVSTTN LFMPEPEDAV AHGDKNLDVN
1001: DFFTRTS
0101: DYSGYTPYQT SANPPQNYSN TGYSNYYSGY QQQQQQPSQS GAYQNTGAPY QPISSFQNPG SYPAATASYS GTYYNPPDYQ TNGGYQTTNY NNQSAGGCYP
0201: SANYSNQTNT PNQGNYTANP YQNYTPDAAN TYSSTVSTTT PVHYQQNYQQ WPAYYSQTEV PCAPGTEKLS ATSAVSQSFP VPGVTNETPA SNVQPAPSYA
0301: QPWRQETNLS QPSSQQPAAA VSASNDAYWK HQTPNQQAHY PVPPQNHYQS PLETKPLYET PFQGHQRATY PQGMNSQSSV HQAPLGYRQP TQTTPSVDAQ
0401: RVSKVQIPTN PRIASNFPSG YTKMDKGSSA AGLTQSPAYV SVSMPKPKGH ATAVPEPGTL PKSLCGFVER AFARCKDDKE KASCQAALKK VITEARDDGS
0501: LHTRDWDTEP LSTVLNTDMT NTESSSTLIS SLQNKSPTKR PKSRWEPFVE KPFVKSALTF SSGVKFGGWN QQNQNNKKSF ESFQKADAVT DSKPTYSWQN
0601: SKPAYAWQNS AKKSFQRPVK RQRFSGGAAN AIDDEASSDS DKDSTPSAMS FATSAEETKR RDSRSKRFEK VQGHSRRNDI PKPMNVGNLH SRRGTALRLG
0701: EDFDESGCRS VEDIDWNALT VKGTCQEIEK RYFRLTSAPD PSAVRPEDVL EKALLMVQDS QKNYLYKCDQ LKSIRQDLTV QRIHNHLTVK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKILYA EGIEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSKEAK KDEAVRHALS VRGAVTSGNY VMFFRLYKTA PNMNSFLMDL
0901: YVEKMRYKAV TFMSRSCRPT IPVSYIAQVL GFTNTLSEGT GEKETNGVEV CSEWLKAHGA SLIADSNGDM LLDTKVSTTN LFMPEPEDAV AHGDKNLDVN
1001: DFFTRTS
0001: MNHGGNTQAV APMDPNSIEN RYGVDGSQTQ KYSYQYSTGS ESAPWTGHSV ENQAVENGNY SNSNYYHPQP TGPATGNVQE IPNTVSFTIS STSGTANVAQ
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
Arabidopsis Description
SAC3ASAC3 family protein A [Source:UniProtKB/Swiss-Prot;Acc:F4IUY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.