CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74854
CDX83123
CDX93271
CDY07001
CDY13554
CDY13555
CDY35873
CDY44640
CDY62753
CDY66989
CDY67021

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06290.1	CDY13554	AT2G19560.1	19843313
AT3G06290.1	CDY13555	AT2G19560.1	19843313
AT3G06290.1	CDY35873	AT2G19560.1	19843313
AT3G06290.1	CDY66989	AT2G19560.1	19843313
AT3G06290.1	CDY67021	AT2G19560.1	19843313
AT3G06290.1	CDX74854	AT2G39340.1	19843313
AT3G06290.1	CDX93271	AT2G39340.1	19843313
AT3G06290.1	CDY07001	AT2G39340.1	19843313
AT3G06290.1	CDY44640	AT2G39340.1	19843313
AT3G06290.1	CDX83123	AT3G50360.1	19843313
AT3G06290.1	CDY62753	AT3G50360.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001190.1-P	Field mustard	plastid	89.24	20.73
CDX74111	Canola	plastid	88.19	20.39
CDY24705	Canola	cytosol, plastid	54.59	17.12
CDY05249	Canola	nucleus	51.44	16.88
AT3G06290.1	Thale cress	plastid	71.39	16.03
CDY08059	Canola	cytosol, plastid	32.28	12.77
HORVU2Hr1G025040.2	Barley	plastid	23.62	8.42
Zm00001d022344_P001	Maize	cytosol	25.72	8.06
VIT_05s0020g02350.t01	Wine grape	nucleus	31.5	7.92
Solyc12g035670.1.1	Tomato	nucleus	32.02	7.8
KRH20952	Soybean	nucleus	30.45	7.69
KRH11322	Soybean	nucleus	31.23	7.65
GSMUA_Achr5P27420_001	Banana	cytosol	24.41	7.45
Zm00001d022343_P001	Maize	plastid	26.77	5.63
OQU90370	Sorghum	plastid	25.72	5.54
TraesCS2D01G144800.1	Wheat	plastid	23.36	5.39
CDY07542	Canola	plastid	5.25	5.17
TraesCS2A01G141300.1	Wheat	cytosol	23.88	5.14
TraesCS2B01G166300.1	Wheat	cytosol	23.36	4.97
CDX67598	Canola	plastid	4.99	4.95
Zm00001d022346_P001	Maize	cytosol	22.05	3.06
CDY24706	Canola	cytosol	2.36	2.88

Protein Annotations

EnsemblPlants:CDY70818	EnsemblPlantsGene:GSBRNA2T00007753001	PANTHER:PTHR12436	PANTHER:PTHR12436:SF17	ProteinID:CDY70818	ProteinID:CDY70818.1
SEG:seg	UniParc:UPI0004EDF3FF	UniProt:A0A078JTD9	MapMan:35.1	:	:

Description

BnaC03g73260DBnaC03g73260D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JTD9]

Coordinates

chrLK043432:-:1658..2978

Molecular Weight (calculated)

42473.3 Da

IEP (calculated)

5.302

GRAVY (calculated)

-0.548

Length

381 amino acids

Sequence
(BLAST)

001: FILFYQLRTQ ALASLHSGLQ NNQGIPVSDT SNWIGMEEED IEALLEYHGF SIKEFEEPYM VKDGLFLHAD TDYKTKCSKL VHMKKSRTIV EDVSAPSTKE
101: NVSAPSPLSS LPTEANKGHK QLITTYKQER PPAQSPKKQT SVRPVDKEMT DSKTSLLLEE DKPVRTSVIN PVWPPVINPA VDQQKQNDLT PAGGFHSPLK
201: FNSPFGSPGF PQAESSNLKK QPNDGHTSIP PAEDKYPFAG HMLTNLVPEP TLQQSPMSMP MESLPVATIS ESPTIVESIS ALEESVPEAA MVCTLEEDLH
301: DIEQEGEDGN EDITNQYDEE VAKAKLKLMI RLWKRWSSRQ SQLRERRQLA AAAALNSLSL GTPIRFSKPH VSFIFLPHNM C

Best Arabidopsis Sequence Match ( AT3G06290.4 )
(BLAST)

0001: MKPLDNKQTF NSLESSRDAL KGDALPDYEN SEQPSLIIGV CPDMCPESER GERERKGDLD HYERVDGDRN QTSKSLAVKK YTRTAEREAI LIRPMPILQN
0101: TMEYLLSLLD RPYNENFLGM YNFLWDRMRA IRMDLRMQHI FNQEAITLLE QMIRLHIIAM HELCEYTKGE GFSEGFDAHL NIEQMNKTSV ELFQMYDDHR
0201: KKGITVPTEK EFRGYYALLK LDKHPGYKVE PSELSLDLAN MTPEIRQTSE VLFARNVARA CRTGNFIAFF RLARKASYLQ ACLMHAHFSK LRTQALASLH
0301: SGLQINQGLP VSDMSNWIGM EEEDIEALLE YHGFSIKVFE EPYMVKNDLF LHADKDYKTK CSKLVHMKKS RTIVEDVSAP TVVEDVSTPF PLPSLITEAT
0401: IGNQQCITAH KHEMPPARSL KKQTSMRLFD KEVADSKTSL LAEEDKPMGT FVMNPPGPFV INPVVHQEKQ NDLTSAGGFH SPVKLYSPFG SPKFPQTKSS
0501: NLEKQPNDDR IGMSPGEIKF SIIGDVYTNH VPGPALQQSP KSMPMEIMPV TTIAECPTSV ENKYALEESV PEAAMICTLE KEFNDIDEED EDEDGVILNQ
0601: YDEEVAKAKL KLIIRLWKRW SSRQSELRER RQLAAAAALN SLSLGTPIRF SKTDQSRACG EFNIDQAMRR RFEEREKSWS RLNISDVIAD ILVGRNPESK
0701: CISWKVVLCT QTKSVNSSSS ASQVTHSAAS RWLSSKLMPH AEHSSLNDDN LLFSAPGVSV WNKWVANGSD IDFTCCLSVA RDVEAENDMC ETTCGASAVL
0801: FLASGGLPLN LQREQLNLIL ESVPNGSVLP LLVVISSCNG EHMEPDTDIV SGLGLHDIDK SKIASFSIVS IANKSQKGQE VHFFNDSRLR DGFKWLASNS
0901: PLQPNLHHVK LRELFLTHFS FSLELLKQMP DQEVGPNICI SAFNDALETS RRNITSAAEA NPIGWPCPET MLLEDNRKEC LMVKRYLPNL DWSSAENVEL
1001: LSSVLENCKL PDFEDDLTWL TVGCASGAEI ENHTQRLEGC LIEYLTQRSN LMGVSLATKE TGVMLERNTR LELHNSSRYH ITPRWIGIFQ RIFNWRIMGL
1101: FDASSSSAYV LKSDLNMSTS SYADKFLAED ASYPSCPPNL PLLHEMIEIS CSPLKSPPPY DDKAQRVVET GMLIDDHRDI EESMLEKNRE ACRGIDLMIT
1201: EDDELGERSW RSKGREAAEK KTIEKRESER LDELLEKCNM VQNSIAEKLC IYF

Arabidopsis Description

SAC3BSAC3 family protein B [Source:UniProtKB/Swiss-Prot;Acc:F4JAU2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.