CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67598	Canola	plastid	90.18	90.89
AT3G54380.1	Thale cress	mitochondrion	76.23	72.66
VIT_13s0067g01060.t01	Wine grape	cytosol	43.15	59.43
VIT_13s0067g02370.t01	Wine grape	endoplasmic reticulum, golgi	50.9	57.77
VIT_13s0067g02460.t01	Wine grape	cytosol	32.04	53.45
VIT_13s0067g02620.t01	Wine grape	mitochondrion, plastid	54.01	51.35
KRH20594	Soybean	plastid	52.2	49.88
VIT_13s0067g01430.t01	Wine grape	plastid	53.75	49.06
VIT_13s0067g01260.t01	Wine grape	plastid	54.01	47.83
Solyc06g061120.2.1	Tomato	plastid	50.65	47.0
PGSC0003DMT400005365	Potato	plastid	50.13	46.52
GSMUA_Achr8P09880_001	Banana	nucleus	47.03	44.72
TraesCS1B01G271000.1	Wheat	cytosol	43.67	43.33
TraesCS1D01G260400.1	Wheat	cytosol	43.41	43.08
Zm00001d047474_P003	Maize	mitochondrion	44.19	42.96
KXG39369	Sorghum	nucleus	42.89	42.13
HORVU4Hr1G048800.3	Barley	cytosol, peroxisome	41.86	37.94
KRH13256	Soybean	plastid	34.88	36.49
VIT_18s0041g00180.t01	Wine grape	mitochondrion	13.95	35.76
Os03t0352200-01	Rice	plasma membrane	13.18	28.98
CDY08059	Canola	cytosol, plastid	28.94	11.63
CDY05249	Canola	nucleus	29.46	9.82
CDY24705	Canola	cytosol, plastid	30.23	9.63
CDY24706	Canola	cytosol	7.24	8.97
CDX74111	Canola	plastid	29.97	7.04
CDY70818	Canola	mitochondrion	5.17	5.25

Protein Annotations

EnsemblPlants:CDY07542	EnsemblPlantsGene:GSBRNA2T00124604001	Gene3D:1.25.40.990	InterPro:IPR000717	InterPro:PCI_dom	InterPro:SAC3/GANP/THP3
PANTHER:PTHR12436	PANTHER:PTHR12436:SF3	PFAM:PF03399	PFscan:PS50250	ProteinID:CDY07542	ProteinID:CDY07542.1
SEG:seg	UniParc:UPI0004EE0F8A	UniProt:A0A078F3C5	MapMan:16.11.2.1	:	:

Description

BnaC06g15220DBnaC06g15220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3C5]

Coordinates

chrLK031979:+:494812..497298

Molecular Weight (calculated)

44398.0 Da

IEP (calculated)

8.081

GRAVY (calculated)

-0.445

Length

387 amino acids

Sequence
(BLAST)

001: MNRRSRGSSS SSGSVGGASD SCRRRSDVPR NRNNDNNKGG DSADVSFIVG TCSSMCPERE RVTRERLRDL SVFERLHGNP TKSSSDLAVK KFCRTLSAAD
101: VQASDVRPLP VLEETLRYLL SLMDSREHPF EVVHDFIFDR TRSVRQDLSI QNLASERVIH LYEEIVKFHV ISRQRLQSCS GASISSMHHL NMEQLAKTLT
201: TLYNIYDVNR KPDYIYENEA EFRSLYVLLH LNTSSGVMGE PLSLWFRKLT SNLIKSKEMC FVRKLLRSYR NGNYRSFLRT TASEATYLQY CISEPHIREM
301: RSFAVECINN VCYKLQPYPL LRLSQNLMMK ELDVESLCHE CGLEIRTDSD GCIVLPTKQT SFCRPKEGFK NYDLIGIEVE SLLCEDT

Best Arabidopsis Sequence Match ( AT3G54380.1 )
(BLAST)

001: MNRRNRGSSS SSSRVSNTYG NRQFSDNPRT GSGGGVNESF QRRSDAPHKR NNEKDESKHK DEDPADVSLI VGTCSSMCPE RERVTRERLR DLAVFERLYG
101: NPSKSSTEIA VKKFCRTLSA ADVQASDVRP LPVLEETLRY LLSLLDSKEH PFEVVHDFIF DRTRSIRQDL SIQNLANERV IYLYEEMVKF HVISHERLQS
201: CSGTSISSMH HLNMEQLAKT LTSLYNIYDA NRKPDYIYEN EAEFRSLYVL LHLNPSSGVM GEPLSLWFRK LTFALVKSKE ICFVRNLLRL YRMGNYKNFL
301: SRTASEATYL QYCISEHHIR EMRLVAVQYI NNVCYKLQPY PLLRLSQNLK MKELDVESLC HECGLETCTD PDGFTVLPVK QSTFRSPEDK FKVYDLIGIE
401: RIKMSI

Arabidopsis Description

SAC3CSAC3 family protein C [Source:UniProtKB/Swiss-Prot;Acc:Q67XV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.