Factsheet for PGSC0003DMT400005365

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g061120.2.1	Tomato	plastid	85.61	85.61
VIT_13s0067g01060.t01	Wine grape	cytosol	42.93	63.7
VIT_13s0067g02370.t01	Wine grape	endoplasmic reticulum, golgi	50.6	61.88
VIT_13s0067g02460.t01	Wine grape	cytosol	33.81	60.78
VIT_13s0067g02620.t01	Wine grape	mitochondrion, plastid	55.64	57.0
VIT_13s0067g01430.t01	Wine grape	plastid	55.64	54.72
KRH20594	Soybean	plastid	51.56	53.09
VIT_13s0067g01260.t01	Wine grape	plastid	54.92	52.4
Bra003181.1-P	Field mustard	mitochondrion, plastid	47.48	51.43
CDX67598	Canola	plastid	46.76	50.78
CDY07542	Canola	plastid	46.52	50.13
AT3G54380.1	Thale cress	mitochondrion	47.0	48.28
GSMUA_Achr8P09880_001	Banana	nucleus	44.6	45.7
KXG39369	Sorghum	nucleus	41.25	43.65
VIT_18s0041g00180.t01	Wine grape	mitochondrion	15.59	43.05
Zm00001d047474_P003	Maize	mitochondrion	40.53	42.46
TraesCS1B01G271000.1	Wheat	cytosol	38.61	41.28
TraesCS1D01G260400.1	Wheat	cytosol	38.61	41.28
KRH13256	Soybean	plastid	34.05	38.38
HORVU4Hr1G048800.3	Barley	cytosol, peroxisome	39.09	38.17
Os03t0352200-01	Rice	plasma membrane	12.23	28.98

Protein Annotations

EnsemblPlants:PGSC0003DMT400005365	EnsemblPlantsGene:PGSC0003DMG401002094	EntrezGene:102606371	Gene3D:1.25.40.990	InterPro:SAC3/GANP/THP3	PANTHER:PTHR12436
PANTHER:PTHR12436:SF3	PFAM:PF03399	PGSC:PGSC0003DMG401002094	RefSeq:XP_006361179.1	SEG:seg	UniParc:UPI000295701D
UniProt:M0ZPS2	MapMan:16.11.2.1	:	:	:	:

Description

Leng8 protein [Source:PGSC_GENE;Acc:PGSC0003DMG401002094]

Coordinates

chr6:+:44656939..44666104

Molecular Weight (calculated)

47926.9 Da

IEP (calculated)

8.398

GRAVY (calculated)

-0.522

Length

417 amino acids

Sequence
(BLAST)

001: MAGRSQPPYR PRPNFSSSSS RSFHPSQPSR NSQSHHTKNV NSSTPNSTQI QNNASDKKTS SSSWDKSIDE DIDDIQNLVG TCPFMCPVEE REKRERLRDL
101: AVFERLHGNP RQSSPGLAVK KFCRTISVKT LQDSDVRPLS VLEDTLNYLC NLLDSTEHPF EMVHDFIFDR MRSIRQDLSM QNISCSRVVS MYERMVKFHI
201: ISQHKLRRCS GSNISSLSYL NMEQLTKALA TLFNLYEANR TTASIFENEA EFFSFYVLLH LDSKTQGTGE TLSLWFRRVP SHIMKSTEMN FARKILRYFK
301: LGFYKKFIHT TESEASYLQY CIIEPSINEV RALAISCVNY GGYKPQPFPL ATLSKLLMMK EWDVASFCND SGLQTSVDEE GNSCLPTKQT TLIHPKGGLH
401: KYYPLESERF ERFSVEL

Best Arabidopsis Sequence Match ( AT3G54380.1 )
(BLAST)

001: MNRRNRGSSS SSSRVSNTYG NRQFSDNPRT GSGGGVNESF QRRSDAPHKR NNEKDESKHK DEDPADVSLI VGTCSSMCPE RERVTRERLR DLAVFERLYG
101: NPSKSSTEIA VKKFCRTLSA ADVQASDVRP LPVLEETLRY LLSLLDSKEH PFEVVHDFIF DRTRSIRQDL SIQNLANERV IYLYEEMVKF HVISHERLQS
201: CSGTSISSMH HLNMEQLAKT LTSLYNIYDA NRKPDYIYEN EAEFRSLYVL LHLNPSSGVM GEPLSLWFRK LTFALVKSKE ICFVRNLLRL YRMGNYKNFL
301: SRTASEATYL QYCISEHHIR EMRLVAVQYI NNVCYKLQPY PLLRLSQNLK MKELDVESLC HECGLETCTD PDGFTVLPVK QSTFRSPEDK FKVYDLIGIE
401: RIKMSI

Arabidopsis Description

SAC3CSAC3 family protein C [Source:UniProtKB/Swiss-Prot;Acc:Q67XV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.