CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g01060.t01	Wine grape	cytosol	45.19	65.12
VIT_13s0067g02460.t01	Wine grape	cytosol	36.54	63.79
VIT_13s0067g02370.t01	Wine grape	endoplasmic reticulum, golgi	53.33	63.34
VIT_13s0067g02620.t01	Wine grape	mitochondrion, plastid	58.27	57.99
KRH13256	Soybean	plastid	52.35	57.3
VIT_13s0067g01430.t01	Wine grape	plastid	58.27	55.66
Bra003181.1-P	Field mustard	mitochondrion, plastid	50.86	53.51
VIT_13s0067g01260.t01	Wine grape	plastid	57.04	52.86
CDX67598	Canola	plastid	49.63	52.34
CDY07542	Canola	plastid	49.88	52.2
AT3G54380.1	Thale cress	mitochondrion	52.1	51.97
PGSC0003DMT400005365	Potato	plastid	53.09	51.56
Solyc06g061120.2.1	Tomato	plastid	52.59	51.08
GSMUA_Achr8P09880_001	Banana	nucleus	48.64	48.4
Zm00001d047474_P003	Maize	mitochondrion	44.69	45.48
KXG39369	Sorghum	nucleus	43.46	44.67
TraesCS1B01G271000.1	Wheat	cytosol	41.73	43.33
TraesCS1D01G260400.1	Wheat	cytosol	41.73	43.33
VIT_18s0041g00180.t01	Wine grape	mitochondrion	14.81	39.74
HORVU4Hr1G048800.3	Barley	cytosol, peroxisome	41.23	39.11
Os03t0352200-01	Rice	plasma membrane	12.84	29.55
KRH20952	Soybean	nucleus	27.9	7.49
KRH11322	Soybean	nucleus	27.9	7.26

Protein Annotations

EMBL:ACUP02008281	EnsemblPlants:KRH20594	EnsemblPlantsGene:GLYMA_13G187800	EntrezGene:100802804	Gene3D:1.25.40.990	InterPro:SAC3/GANP/THP3
PANTHER:PTHR12436	PANTHER:PTHR12436:SF3	PFAM:PF03399	ProteinID:KRH20594	ProteinID:KRH20594.1	SEG:seg
UniParc:UPI000233B953	UniProt:I1M0J2	MapMan:16.11.2.1	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:30154284..30165020

Molecular Weight (calculated)

46176.1 Da

IEP (calculated)

8.895

GRAVY (calculated)

-0.421

Length

405 amino acids

Sequence
(BLAST)

001: MEGGYGNRGS SFSQSRRGRG RGRGQRFPSN QSKVSSFAER GTPSSSSANR ASASVISNTL EDDAQPSSNF VGTCPYMCPE RERIQREKLR DLAIFERLHG
101: NPGKSSPALA VKKFCRTIST KYVQASDMRP ITVLEDTLNY LLSLLESKEH LFEVVHDFVF DRTRSIRQDI TMQNIVNKKA IYMYEGMVKF HVVSHYKLWC
201: SMSDPNTASL HHLNMEQLTK TLASLFNLYE ANQNSNHVHE NEAEFHSLYV LLHLGSYSQP MGEPLSLWFQ RVSTPVLKSK EMCFARRILR SFRLGNYKDF
301: FCTAAAQASY LQFCIMMPYI NEVRVLALSC INFGGYKLHP YPLLDLSKLL FIKESDLESF CNHCGLETGT DESGNKLLPT KQTTFSHPKG GFQRYSFLGL
401: QEYER

Best Arabidopsis Sequence Match ( AT3G54380.1 )
(BLAST)

001: MNRRNRGSSS SSSRVSNTYG NRQFSDNPRT GSGGGVNESF QRRSDAPHKR NNEKDESKHK DEDPADVSLI VGTCSSMCPE RERVTRERLR DLAVFERLYG
101: NPSKSSTEIA VKKFCRTLSA ADVQASDVRP LPVLEETLRY LLSLLDSKEH PFEVVHDFIF DRTRSIRQDL SIQNLANERV IYLYEEMVKF HVISHERLQS
201: CSGTSISSMH HLNMEQLAKT LTSLYNIYDA NRKPDYIYEN EAEFRSLYVL LHLNPSSGVM GEPLSLWFRK LTFALVKSKE ICFVRNLLRL YRMGNYKNFL
301: SRTASEATYL QYCISEHHIR EMRLVAVQYI NNVCYKLQPY PLLRLSQNLK MKELDVESLC HECGLETCTD PDGFTVLPVK QSTFRSPEDK FKVYDLIGIE
401: RIKMSI

Arabidopsis Description

SAC3CSAC3 family protein C [Source:UniProtKB/Swiss-Prot;Acc:Q67XV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.