Factsheet for VIT_13s0067g02370.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 2
endoplasmic reticulum 4
extracellular 3
vacuole 3
plasma membrane 3
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g01060.t01	Wine grape	cytosol	80.35	97.51
VIT_13s0067g02460.t01	Wine grape	cytosol	65.4	96.12
VIT_13s0067g02620.t01	Wine grape	mitochondrion, plastid	92.67	77.64
VIT_13s0067g01430.t01	Wine grape	plastid	92.67	74.53
VIT_13s0067g01260.t01	Wine grape	plastid	91.2	71.17
VIT_18s0041g00180.t01	Wine grape	mitochondrion	24.34	54.97
KRH20594	Soybean	plastid	63.34	53.33
CDX67598	Canola	plastid	57.77	51.3
Bra003181.1-P	Field mustard	mitochondrion, plastid	57.77	51.17
CDY07542	Canola	plastid	57.77	50.9
PGSC0003DMT400005365	Potato	plastid	61.88	50.6
Solyc06g061120.2.1	Tomato	plastid	61.0	49.88
AT3G54380.1	Thale cress	mitochondrion	57.18	48.03
GSMUA_Achr8P09880_001	Banana	nucleus	57.18	47.91
Zm00001d047474_P003	Maize	mitochondrion	51.61	44.22
KXG39369	Sorghum	nucleus	51.03	44.16
TraesCS1B01G271000.1	Wheat	cytosol	48.68	42.56
TraesCS1D01G260400.1	Wheat	cytosol	48.68	42.56
KRH13256	Soybean	plastid	42.82	39.46
HORVU4Hr1G048800.3	Barley	cytosol, peroxisome	49.27	39.34
Os03t0352200-01	Rice	plasma membrane	11.73	22.73
VIT_05s0020g02350.t01	Wine grape	nucleus	30.79	6.93

Protein Annotations

ArrayExpress:VIT_13s0067g02370	EMBL:FN595533	EnsemblPlants:VIT_13s0067g02370.t01	EnsemblPlantsGene:VIT_13s0067g02370	EntrezGene:100853276	EntrezGene:LOC100853276
Gene3D:1.25.40.990	InterPro:SAC3/GANP/THP3	PANTHER:PTHR12436	PANTHER:PTHR12436:SF3	PFAM:PF03399	ProteinID:CCB50104
ProteinID:CCB50104.1	RefSeq:XP_003634892	RefSeq:XP_003634892.1	SEG:seg	UniParc:UPI000210A116	UniProt:F6HD09
wikigene:100853276	wikigene:LOC100853276	MapMan:16.11.2.1	:	:	:

Description

No Description!

Coordinates

chr13_random:-:1308493..1313790

Molecular Weight (calculated)

39701.4 Da

IEP (calculated)

8.735

GRAVY (calculated)

-0.185

Length

341 amino acids

Sequence
(BLAST)

001: MHLVKLCISY ACIYFLMTGE RAQRERLRDL AVFERLHGNP GKTSPSLAVK KFCRTIATKH MQASDVRPLP VLEETLNYLL NLLDATEHPF EVVHDFGFDR
101: TRSIRQDLSM QNIVNDQTIH MFEEMVKFHI ISHHKLRSCS SKPSFSSVHY LNMEQLKKCL ISLYALYKEN RNSNSIYKNE PEFYSFHVLL HLGSNSQPLG
201: ESLSLWLGRV PSLILKSKEM CFARRLLRLF RMGNYKRFLC TTATEASYLQ YYIIEPYINE VRALALSCVN YCGYKLHLYP IAHLSKLLMM KELDVESFCT
301: ACGLETSTNE RGNKFLSTKQ TNFHYPKEVF PSYCLLGLEH F

Best Arabidopsis Sequence Match ( AT3G54380.3 )
(BLAST)

001: MILPCIGKRE RVTRERLRDL AVFERLYGNP SKSSTEIAVK KFCRTLSAAD VQASDVRPLP VLEETLRYLL SLLDSKEHPF EVVHDFIFDR TRSIRQDLSI
101: QNLANERVIY LYEEMVKFHV ISHERLQSCS GTSISSMHHL NMEQLAKTLT SLYNIYDANR KPDYIYENEA EFRSLYVLLH LNPSSGVMGE PLSLWFRKLT
201: FALVKSKEIC FVRNLLRLYR MGNYKNFLSR TASEATYLQY CISEHHIREM RLVAVQYINN VCYKLQPYPL LRLSQNLKMK ELDVESLCHE CGLETCTDPD
301: GFTVLPVKQS TFRSPEDKFK VYDLIGIERI KMSI

Arabidopsis Description

SAC3CSAC3 family protein C [Source:UniProtKB/Swiss-Prot;Acc:Q67XV2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.