Factsheet for VIT_13s0067g01430.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g02460.t01	Wine grape	cytosol	54.25	99.14
VIT_13s0067g02620.t01	Wine grape	mitochondrion, plastid	94.81	98.77
VIT_13s0067g01060.t01	Wine grape	cytosol	64.39	97.15
VIT_13s0067g02370.t01	Wine grape	endoplasmic reticulum, golgi	74.53	92.67
VIT_13s0067g01260.t01	Wine grape	plastid	93.16	90.39
KRH20594	Soybean	plastid	55.66	58.27
Solyc06g061120.2.1	Tomato	plastid	54.95	55.88
PGSC0003DMT400005365	Potato	plastid	54.72	55.64
VIT_18s0041g00180.t01	Wine grape	mitochondrion	19.58	54.97
Bra003181.1-P	Field mustard	mitochondrion, plastid	49.53	54.55
CDX67598	Canola	plastid	49.29	54.43
CDY07542	Canola	plastid	49.06	53.75
AT3G54380.1	Thale cress	mitochondrion	50.47	52.71
GSMUA_Achr8P09880_001	Banana	nucleus	50.47	52.58
Zm00001d047474_P003	Maize	mitochondrion	44.81	47.74
KXG39369	Sorghum	nucleus	44.1	47.46
TraesCS1B01G271000.1	Wheat	cytosol	42.92	46.67
TraesCS1D01G260400.1	Wheat	cytosol	42.92	46.67
HORVU4Hr1G048800.3	Barley	cytosol, peroxisome	42.69	42.39
KRH13256	Soybean	plastid	36.32	41.62
Os03t0352200-01	Rice	plasma membrane	13.21	31.82
VIT_05s0020g02350.t01	Wine grape	nucleus	28.07	7.85

Protein Annotations

Gene3D:1.25.40.990	EntrezGene:100252235	wikigene:100252235	EntrezGene:100852594	wikigene:100852594	EntrezGene:100854600
wikigene:100854600	MapMan:16.11.2.1	ProteinID:CBI40637	ProteinID:CBI40637.3	UniProt:D7UD22	EMBL:FN596756
EntrezGene:LOC100252235	wikigene:LOC100252235	EntrezGene:LOC100852594	wikigene:LOC100852594	EntrezGene:LOC100854600	wikigene:LOC100854600
PFAM:PF03399	PANTHER:PTHR12436	PANTHER:PTHR12436:SF3	InterPro:SAC3/GANP/THP3	UniParc:UPI0001BE52B3	ArrayExpress:VIT_13s0067g01430
EnsemblPlantsGene:VIT_13s0067g01430	EnsemblPlants:VIT_13s0067g01430.t01	unigene:Vvi.20711	RefSeq:XP_002269431	RefSeq:XP_002269431.1	RefSeq:XP_003634875
RefSeq:XP_003634875.1	RefSeq:XP_003634889	RefSeq:XP_003634889.1	RefSeq:XP_003634893	RefSeq:XP_003634893.1	SEG:seg

Description

No Description!

Coordinates

chr13_random:+:810182..820908

Molecular Weight (calculated)

48772.6 Da

IEP (calculated)

8.617

GRAVY (calculated)

-0.429

Length

424 amino acids

Sequence
(BLAST)

001: MLLAKWIILA ETRAQAVMDR RQRRNPSASS SAFSSPTSSS SRFRSEKFSS NPPKTSNSLE DAHQLKSKCG KPQRPEQEEE GEQDPNNLLS LVGTCPFMCP
101: AGERAQRERL RDLAVFERLH GNPGKTSPSL AVKKFCRTIA TKHMQASDVR PLPVLEETLN YLLNLLDATE HPFEVVHDFV FDRTRSIRQD LSMQNIVNDQ
201: TIHMYEEMVK FHIISHHKLR SCSSKPNFSS VHYLNMEQLK KCLISLYALY EENRNSNSIY KNEPEFCSFH VLLHLGSNNQ PLGESLSLWL GRVPSLILKS
301: KEMCFARRLL RLFRMGNYKR FLCTTATEAS YLQYYIIEPY INEVRALALS CVNYCGYKLH PYPIAHLSKL LMMKELDVES FCNACGLETS TGERGNKFLS
401: TKQTNFHYPK EVFPSYCLLS LEHF

Best Arabidopsis Sequence Match ( AT3G54380.1 )
(BLAST)

001: MNRRNRGSSS SSSRVSNTYG NRQFSDNPRT GSGGGVNESF QRRSDAPHKR NNEKDESKHK DEDPADVSLI VGTCSSMCPE RERVTRERLR DLAVFERLYG
101: NPSKSSTEIA VKKFCRTLSA ADVQASDVRP LPVLEETLRY LLSLLDSKEH PFEVVHDFIF DRTRSIRQDL SIQNLANERV IYLYEEMVKF HVISHERLQS
201: CSGTSISSMH HLNMEQLAKT LTSLYNIYDA NRKPDYIYEN EAEFRSLYVL LHLNPSSGVM GEPLSLWFRK LTFALVKSKE ICFVRNLLRL YRMGNYKNFL
301: SRTASEATYL QYCISEHHIR EMRLVAVQYI NNVCYKLQPY PLLRLSQNLK MKELDVESLC HECGLETCTD PDGFTVLPVK QSTFRSPEDK FKVYDLIGIE
401: RIKMSI

Arabidopsis Description

SAC3CSAC3 family protein C [Source:UniProtKB/Swiss-Prot;Acc:Q67XV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.