Factsheet for VIT_13s0067g02620.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g02460.t01	Wine grape	cytosol	56.51	99.14
VIT_13s0067g01060.t01	Wine grape	cytosol	66.83	96.8
VIT_13s0067g01430.t01	Wine grape	plastid	98.77	94.81
VIT_13s0067g02370.t01	Wine grape	endoplasmic reticulum, golgi	77.64	92.67
VIT_13s0067g01260.t01	Wine grape	plastid	97.05	90.39
KRH20594	Soybean	plastid	57.99	58.27
Solyc06g061120.2.1	Tomato	plastid	57.25	55.88
PGSC0003DMT400005365	Potato	plastid	57.0	55.64
VIT_18s0041g00180.t01	Wine grape	mitochondrion	20.39	54.97
Bra003181.1-P	Field mustard	mitochondrion, plastid	51.84	54.81
CDX67598	Canola	plastid	51.6	54.69
CDY07542	Canola	plastid	51.35	54.01
AT3G54380.1	Thale cress	mitochondrion	52.83	52.96
GSMUA_Achr8P09880_001	Banana	nucleus	52.33	52.33
Zm00001d047474_P003	Maize	mitochondrion	46.93	47.99
KXG39369	Sorghum	nucleus	46.19	47.72
TraesCS1B01G271000.1	Wheat	cytosol	44.96	46.92
TraesCS1D01G260400.1	Wheat	cytosol	44.96	46.92
HORVU4Hr1G048800.3	Barley	cytosol, peroxisome	44.47	42.39
KRH13256	Soybean	plastid	38.08	41.89
Os03t0352200-01	Rice	plasma membrane	13.76	31.82
VIT_05s0020g02350.t01	Wine grape	nucleus	28.75	7.72

Protein Annotations

Gene3D:1.25.40.990	EntrezGene:100259082	wikigene:100259082	EntrezGene:100852523	wikigene:100852523	MapMan:16.11.2.1
ProteinID:CCB50110	ProteinID:CCB50110.1	UniProt:F6HD15	EMBL:FN595533	EntrezGene:LOC100259082	wikigene:LOC100259082
EntrezGene:LOC100852523	wikigene:LOC100852523	PFAM:PF03399	PANTHER:PTHR12436	PANTHER:PTHR12436:SF3	InterPro:SAC3/GANP/THP3
UniParc:UPI0001984852	ArrayExpress:VIT_13s0067g02620	EnsemblPlantsGene:VIT_13s0067g02620	EnsemblPlants:VIT_13s0067g02620.t01	RefSeq:XP_002269431.1	RefSeq:XP_003634888
RefSeq:XP_003634888.1	RefSeq:XP_010645592.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13_random:-:1410803..1425704

Molecular Weight (calculated)

46907.2 Da

IEP (calculated)

8.421

GRAVY (calculated)

-0.494

Length

407 amino acids

Sequence
(BLAST)

001: MDRRQRRNPS ASSSAFSSPA SSSSRFRSEK FSSNPPKTSN SLEDAHQLKS KCGKPQRPEQ EEEEEQDPNN LLSLVGTCPF MCPAGERAQR ERLRDLAVFE
101: RLHGNPGKTS PSLAVKKFCR TIATKHMQAS DVRPLPVLEE TLNYLLNLLD ATEHPFEVVH DFIFDRTRSI RQDLSMQNIV NDQTIHMYEE MVKFHIMSHH
201: KLRSCSSKPN FSSVHYLNME QLKKCLISLY ALYEENRNSN SIYKNEPEFC SFHVLLHLGS NNQPLGESLS LWLGRVPSLI LKSKEMCFAR RLLRLFRMGN
301: YKRFLCTTAT EASYLQYYII EPYINEVRAL ALSCVNYCGY KLHPYPIAHL SKLLMMKELD VESFCNACGL ETSTGERGNK FLSTKQTNFH YPKEVFPSYC
401: LLGLEHF

Best Arabidopsis Sequence Match ( AT3G54380.1 )
(BLAST)

001: MNRRNRGSSS SSSRVSNTYG NRQFSDNPRT GSGGGVNESF QRRSDAPHKR NNEKDESKHK DEDPADVSLI VGTCSSMCPE RERVTRERLR DLAVFERLYG
101: NPSKSSTEIA VKKFCRTLSA ADVQASDVRP LPVLEETLRY LLSLLDSKEH PFEVVHDFIF DRTRSIRQDL SIQNLANERV IYLYEEMVKF HVISHERLQS
201: CSGTSISSMH HLNMEQLAKT LTSLYNIYDA NRKPDYIYEN EAEFRSLYVL LHLNPSSGVM GEPLSLWFRK LTFALVKSKE ICFVRNLLRL YRMGNYKNFL
301: SRTASEATYL QYCISEHHIR EMRLVAVQYI NNVCYKLQPY PLLRLSQNLK MKELDVESLC HECGLETCTD PDGFTVLPVK QSTFRSPEDK FKVYDLIGIE
401: RIKMSI

Arabidopsis Description

SAC3CSAC3 family protein C [Source:UniProtKB/Swiss-Prot;Acc:Q67XV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.