CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003181.1-P	Field mustard	mitochondrion, plastid	92.71	92.47
CDY07542	Canola	plastid	90.89	90.18
AT3G54380.1	Thale cress	mitochondrion	74.48	70.44
VIT_13s0067g01060.t01	Wine grape	cytosol	43.49	59.43
VIT_13s0067g02370.t01	Wine grape	endoplasmic reticulum, golgi	51.3	57.77
VIT_13s0067g02460.t01	Wine grape	cytosol	31.77	52.59
VIT_13s0067g02620.t01	Wine grape	mitochondrion, plastid	54.69	51.6
KRH20594	Soybean	plastid	52.34	49.63
VIT_13s0067g01430.t01	Wine grape	plastid	54.43	49.29
VIT_13s0067g01260.t01	Wine grape	plastid	54.43	47.83
Solyc06g061120.2.1	Tomato	plastid	51.04	47.0
PGSC0003DMT400005365	Potato	plastid	50.78	46.76
GSMUA_Achr8P09880_001	Banana	nucleus	46.88	44.23
Zm00001d047474_P003	Maize	mitochondrion	44.01	42.46
TraesCS1B01G271000.1	Wheat	cytosol	42.45	41.79
TraesCS1D01G260400.1	Wheat	cytosol	42.45	41.79
KXG39369	Sorghum	nucleus	42.71	41.62
KRH13256	Soybean	plastid	35.68	37.03
HORVU4Hr1G048800.3	Barley	cytosol, peroxisome	40.89	36.77
VIT_18s0041g00180.t01	Wine grape	mitochondrion	14.06	35.76
Os03t0352200-01	Rice	plasma membrane	11.72	25.57
CDY08059	Canola	cytosol, plastid	30.73	12.25
CDY24705	Canola	cytosol, plastid	30.73	9.71
CDY05249	Canola	nucleus	29.17	9.65
CDY24706	Canola	cytosol	7.29	8.97
CDX74111	Canola	plastid	31.25	7.28
CDY70818	Canola	mitochondrion	4.95	4.99

Protein Annotations

EnsemblPlants:CDX67598	EnsemblPlantsGene:GSBRNA2T00098743001	Gene3D:1.25.40.990	InterPro:IPR000717	InterPro:PCI_dom	InterPro:SAC3/GANP/THP3
PANTHER:PTHR12436	PANTHER:PTHR12436:SF3	PFAM:PF03399	PFscan:PS50250	ProteinID:CDX67598	ProteinID:CDX67598.1
SEG:seg	UniParc:UPI0004EF1737	MapMan:16.11.2.1	:	:	:

Description

BnaA07g16380D

Coordinates

chrLK031787:-:1163601..1166009

Molecular Weight (calculated)

43996.5 Da

IEP (calculated)

8.468

GRAVY (calculated)

-0.465

Length

384 amino acids

Sequence
(BLAST)

001: MNRRSRGSSS SSSGSVGGAS DSYRRRSDVP RNRSNDNNKG GDSADVSFIV GTCSSMCPER ERVTRERLRD LSVFERLHGN PTKSSSDLAV KKFCRTLSAA
101: DVQASDVRPL PVLEETLRYL LSLLDSREHP FEVVHDFIFD RTRSIRQDLS IQNLASERVI HLYEEIVKFH VISRQRLQGC SGASISSMHH LNMEQLAKTL
201: TTLYNIYDAN RKPDYINENE AEFRSLYVLL HLNTSSGVMG EPLSLWFRKL TSNLIKSKEM CFVRKLLRSY RNGNYRSFLR TTASEATYLQ YCISEPHIRE
301: MRSFAVECIN NVCYKLQPYP LLRLSHNLMM KEMDVESLCH ECGLEIRTDS DGSIVLPTKQ TNFCSPKEGF KNYDLIGIEV ERLL

Best Arabidopsis Sequence Match ( AT3G54380.1 )
(BLAST)

001: MNRRNRGSSS SSSRVSNTYG NRQFSDNPRT GSGGGVNESF QRRSDAPHKR NNEKDESKHK DEDPADVSLI VGTCSSMCPE RERVTRERLR DLAVFERLYG
101: NPSKSSTEIA VKKFCRTLSA ADVQASDVRP LPVLEETLRY LLSLLDSKEH PFEVVHDFIF DRTRSIRQDL SIQNLANERV IYLYEEMVKF HVISHERLQS
201: CSGTSISSMH HLNMEQLAKT LTSLYNIYDA NRKPDYIYEN EAEFRSLYVL LHLNPSSGVM GEPLSLWFRK LTFALVKSKE ICFVRNLLRL YRMGNYKNFL
301: SRTASEATYL QYCISEHHIR EMRLVAVQYI NNVCYKLQPY PLLRLSQNLK MKELDVESLC HECGLETCTD PDGFTVLPVK QSTFRSPEDK FKVYDLIGIE
401: RIKMSI

Arabidopsis Description

SAC3CSAC3 family protein C [Source:UniProtKB/Swiss-Prot;Acc:Q67XV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.