Factsheet for VIT_13s0067g01260.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g02620.t01	Wine grape	mitochondrion, plastid	90.39	97.05
VIT_13s0067g02460.t01	Wine grape	cytosol	51.03	96.12
VIT_13s0067g01060.t01	Wine grape	cytosol	61.33	95.37
VIT_13s0067g01430.t01	Wine grape	plastid	90.39	93.16
VIT_13s0067g02370.t01	Wine grape	endoplasmic reticulum, golgi	71.17	91.2
KRH20594	Soybean	plastid	52.86	57.04
Solyc06g061120.2.1	Tomato	plastid	52.63	55.16
VIT_18s0041g00180.t01	Wine grape	mitochondrion	18.99	54.97
PGSC0003DMT400005365	Potato	plastid	52.4	54.92
Bra003181.1-P	Field mustard	mitochondrion, plastid	48.05	54.55
CDX67598	Canola	plastid	47.83	54.43
CDY07542	Canola	plastid	47.83	54.01
AT3G54380.1	Thale cress	mitochondrion	48.97	52.71
GSMUA_Achr8P09880_001	Banana	nucleus	48.74	52.33
Zm00001d047474_P003	Maize	mitochondrion	43.25	47.49
KXG39369	Sorghum	nucleus	42.56	47.21
TraesCS1B01G271000.1	Wheat	cytosol	41.65	46.67
TraesCS1D01G260400.1	Wheat	cytosol	41.65	46.67
HORVU4Hr1G048800.3	Barley	cytosol, peroxisome	41.19	42.15
KRH13256	Soybean	plastid	34.78	41.08
Os03t0352200-01	Rice	plasma membrane	12.81	31.82
VIT_05s0020g02350.t01	Wine grape	nucleus	27.46	7.92

Protein Annotations

ArrayExpress:VIT_13s0067g01260	EMBL:FN596756	EnsemblPlants:VIT_13s0067g01260.t01	EnsemblPlantsGene:VIT_13s0067g01260	EntrezGene:100852775	EntrezGene:LOC100852775
Gene3D:1.25.40.990	InterPro:SAC3/GANP/THP3	PANTHER:PTHR12436	PANTHER:PTHR12436:SF3	PFAM:PF03399	ProteinID:CCB62591
ProteinID:CCB62591.1	RefSeq:XP_003634890	RefSeq:XP_003634890.1	SEG:seg	UniParc:UPI000210AB83	UniProt:F6I6M3
wikigene:100852775	wikigene:LOC100852775	MapMan:16.11.2.1	:	:	:

Description

No Description!

Coordinates

chr13_random:+:719706..729946

Molecular Weight (calculated)

50348.4 Da

IEP (calculated)

8.643

GRAVY (calculated)

-0.469

Length

437 amino acids

Sequence
(BLAST)

001: MDRRQRRNPS ASSSAFSSPA SSSSRFRSEK FSSNPPKTSN SLEDAHQLKS KCGKPQRPEQ EEEEKQDPSN LLSLVGTCPF MCPAGERAQR ERLRDLAVFE
101: RLHGNPGKTS PSLAVKKFCR TIATKHMQAS DVRPLPVLEE TLNYLLNLLD ATEHPFEVVH DFVFDRTRSI RQDLSMQNIV NDQTIHMYEE MVKFHIISHH
201: KLRSCSSKPN FSSVHYLNME QLKKCLISLY ALYKENRNSN SIYKNEPEFC SFHVLLHLGF NNQPLGESLS LWLGRVPSLI LKSKEMCFAR RLLRLFRMGN
301: YKHFLCTTAT EASYLQYYII EPYINEVRAL ALSCVNYCGY KLHPYPIAHL SKLLMMKELD VESFCNACGL ETSTGERGNK FLSTKQTNFH YPKEVFPSYC
401: LRVWNTFRDN PARPNLCVLH GDACFLHPNH AVLCQME

Best Arabidopsis Sequence Match ( AT3G54380.1 )
(BLAST)

001: MNRRNRGSSS SSSRVSNTYG NRQFSDNPRT GSGGGVNESF QRRSDAPHKR NNEKDESKHK DEDPADVSLI VGTCSSMCPE RERVTRERLR DLAVFERLYG
101: NPSKSSTEIA VKKFCRTLSA ADVQASDVRP LPVLEETLRY LLSLLDSKEH PFEVVHDFIF DRTRSIRQDL SIQNLANERV IYLYEEMVKF HVISHERLQS
201: CSGTSISSMH HLNMEQLAKT LTSLYNIYDA NRKPDYIYEN EAEFRSLYVL LHLNPSSGVM GEPLSLWFRK LTFALVKSKE ICFVRNLLRL YRMGNYKNFL
301: SRTASEATYL QYCISEHHIR EMRLVAVQYI NNVCYKLQPY PLLRLSQNLK MKELDVESLC HECGLETCTD PDGFTVLPVK QSTFRSPEDK FKVYDLIGIE
401: RIKMSI

Arabidopsis Description

SAC3CSAC3 family protein C [Source:UniProtKB/Swiss-Prot;Acc:Q67XV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.