Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH20952 | Soybean | nucleus | 45.08 | 45.26 |
| KRH11322 | Soybean | nucleus | 45.54 | 44.34 |
| GSMUA_Achr5P27420_001 | Banana | cytosol | 35.58 | 43.19 |
| Solyc12g035670.1.1 | Tomato | nucleus | 43.63 | 42.24 |
| Bra020761.1-P | Field mustard | cytosol | 42.11 | 38.74 |
| CDY08059 | Canola | cytosol, plastid | 24.22 | 38.11 |
| AT3G06290.1 | Thale cress | plastid | 41.91 | 37.42 |
| Bra001190.1-P | Field mustard | plastid | 40.46 | 37.38 |
| CDY05249 | Canola | nucleus | 28.58 | 37.3 |
| CDX74111 | Canola | plastid | 40.13 | 36.89 |
| CDY24705 | Canola | cytosol, plastid | 29.44 | 36.71 |
| TraesCS2D01G144800.1 | Wheat | plastid | 37.23 | 34.16 |
| HORVU2Hr1G025040.2 | Barley | plastid | 23.17 | 32.83 |
| TraesCS2A01G141300.1 | Wheat | cytosol | 36.96 | 31.64 |
| CDY70818 | Canola | mitochondrion | 7.92 | 31.5 |
| OQU90370 | Sorghum | plastid | 36.77 | 31.49 |
| TraesCS2B01G166300.1 | Wheat | cytosol | 37.1 | 31.4 |
| VIT_13s0067g02370.t01 | Wine grape | endoplasmic reticulum, golgi | 6.93 | 30.79 |
| Zm00001d022343_P001 | Maize | plastid | 36.83 | 30.78 |
| Zm00001d022344_P001 | Maize | cytosol | 24.49 | 30.51 |
| VIT_13s0067g01060.t01 | Wine grape | cytosol | 5.54 | 29.89 |
| VIT_13s0067g02620.t01 | Wine grape | mitochondrion, plastid | 7.72 | 28.75 |
| VIT_13s0067g01430.t01 | Wine grape | plastid | 7.85 | 28.07 |
| VIT_13s0067g01260.t01 | Wine grape | plastid | 7.92 | 27.46 |
| VIT_13s0067g02460.t01 | Wine grape | cytosol | 4.03 | 26.29 |
| Zm00001d022346_P001 | Maize | cytosol | 31.88 | 17.62 |
| VIT_18s0041g00180.t01 | Wine grape | mitochondrion | 1.72 | 17.22 |
Protein Annotations
| Gene3D:1.25.40.990 | EntrezGene:100266559 | wikigene:100266559 | MapMan:16.11.2.1 | EMBL:AM450267 | ProteinID:CAN76572 |
| ProteinID:CAN76572.1 | ProteinID:CCB50369 | ProteinID:CCB50369.1 | UniProt:F6HDJ8 | EMBL:FN595749 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0034399 | GO:GO:0040029 | GO:GO:0044030 | GO:GO:0060968 |
| GO:GO:0090065 | InterPro:IPR000717 | EntrezGene:LOC100266559 | wikigene:LOC100266559 | InterPro:PCI_dom | PFAM:PF03399 |
| PFscan:PS50250 | PANTHER:PTHR12436 | PANTHER:PTHR12436:SF17 | InterPro:SAC3/GANP/THP3 | UniParc:UPI00021095F6 | ArrayExpress:VIT_05s0020g02350 |
| EnsemblPlantsGene:VIT_05s0020g02350 | EnsemblPlants:VIT_05s0020g02350.t01 | unigene:Vvi.16831 | RefSeq:XP_002277304 | RefSeq:XP_002277304.1 | SEG:seg |
Description
No Description!
Coordinates
chr5:+:4037125..4054069
Molecular Weight (calculated)
169917.0 Da
IEP (calculated)
6.231
GRAVY (calculated)
-0.460
Length
1515 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGFGKKSGPQ YTDLDNPFLH MTHPPSPPPP SSQVTASQRS PRWSDYDAQV YQRPSAAPSL FPSHNSETSI SARVSRSQDS KRARSPPVPS MGDEVSRNSK
0101: KFVLRRSSLS SSGWGHRPEV PSSYANLPTH QSVGSVSPYV GSYDSRRSSP TKITDAQVPK RTRSPPILPA NEVFQGNIHL AQNNSKRPSI SPPRFGGSSV
0201: HAPPASQILK KSPPSMLSID AEAAATKPTS ISRTRSPPLH SNDHVFQGNS FSTQDDTERE MQAKAKRLAR FKVELEQPVQ SSFDIANQKI SANRHDLSMV
0301: EKQQLAGEHS VDVARSFPDG NALADHEGLE PPSIIIGLCP DMCPESERAE RERKGDLDQY ERLDGDRNQT SQYLAIKKYN RTAEREAVLI RPMPVLQQTI
0401: DYLLNLLYEP YDDRFLGMYN FLWDRMRAIR MDLRMQHIFD LQAISMLEQM IRLHIIAMHE LCEYTKGEGF SEGFDAHLNI EQMNKTSVEL FQMYDDHRKK
0501: GIIVPTEKEF RGYYALLKLD KHPGYKVEPA ELSLDLAKMT PEMRQTPEVV FARDVARACR TSNFIAFFRL GKKASYLQAC LMHAHFAKLR TQALASLHCG
0601: LQNNQGLPVA HVARWLGMEE EDIESLIEYH GFLIKEFEEP YMVKEGPFLN ADKDYLTKCS ELVHSKKSNT IVEDVASSCQ SMSLPSAKAT ELQLSKDYNH
0701: EPIATAPVGK NDYDPAMDEE MADFEAVSSP KDGTPIQLML GPSTVSQQSA DGHWVASVSS MACDFALAQK SPESQPTKVG KVGQPNFDAL FRNSLEKRRQ
0801: SHMEAMPSQV VSTPVMQERF PVTEFNYPVE NSVPQTVVIK DIEDEELTDI HQEVENDVVA SSQVEEVAEA KLKLILRIWR RRSSKRRELR EQRQLAASAA
0901: LDLLSLGPPI QHNEDQPSTF SEFNIDQIMR ERYQKHEQSW SRLNVSEVVA DKLSGRNPDS KCLCWKIIVC SQMNNPGGEN MGHRSQVAHF AAGTWLLSKL
1001: LPTRKDDDAG LVISLPGLSM WEKWMPSQSD ADMTCCLSIV VEAKFDNLNQ TALGASAVLF LVSESIPLEL QKVRLHNLLM SLPSGSCLPL LILSGTYKKD
1101: ASDPSSAIID ELGLNSIDRS RVSRFSVVFL VQDQQTEHTD GFFSDEQLRK GLYWLASESP LQPILHCVKT RELVLTHLNC SLEVLENMNI YEVGPDQCIS
1201: AFNDALDRSQ GEICVAADAN RTSWPCPEIA LLEESGHEHR AIKLYLPSIR WSSAARIEPL VCALRGCKLP TFPDDISWLN RGSSMGQEIE NQRSLLENCL
1301: IRYLTQLSKM MGLALAKREV HVMLQNSTKL ELHNSSYYIV PKWVMIFRRV FNWQLMSLSS GPASAAYVLE HYSAAPTKSG SSDKPGLEGS RSSPYCLIHP
1401: TLDEMVEVGC SPLLSRKGQS EPEPFQPLPR LVYDSSHVQE YNTNDLEEDE ENFVQGVELA ESNGYTYSTD GLRATGSREL VVVTEATMGA GKLSKLVEQC
1501: NRLQNMIDKK LSVYF
0101: KFVLRRSSLS SSGWGHRPEV PSSYANLPTH QSVGSVSPYV GSYDSRRSSP TKITDAQVPK RTRSPPILPA NEVFQGNIHL AQNNSKRPSI SPPRFGGSSV
0201: HAPPASQILK KSPPSMLSID AEAAATKPTS ISRTRSPPLH SNDHVFQGNS FSTQDDTERE MQAKAKRLAR FKVELEQPVQ SSFDIANQKI SANRHDLSMV
0301: EKQQLAGEHS VDVARSFPDG NALADHEGLE PPSIIIGLCP DMCPESERAE RERKGDLDQY ERLDGDRNQT SQYLAIKKYN RTAEREAVLI RPMPVLQQTI
0401: DYLLNLLYEP YDDRFLGMYN FLWDRMRAIR MDLRMQHIFD LQAISMLEQM IRLHIIAMHE LCEYTKGEGF SEGFDAHLNI EQMNKTSVEL FQMYDDHRKK
0501: GIIVPTEKEF RGYYALLKLD KHPGYKVEPA ELSLDLAKMT PEMRQTPEVV FARDVARACR TSNFIAFFRL GKKASYLQAC LMHAHFAKLR TQALASLHCG
0601: LQNNQGLPVA HVARWLGMEE EDIESLIEYH GFLIKEFEEP YMVKEGPFLN ADKDYLTKCS ELVHSKKSNT IVEDVASSCQ SMSLPSAKAT ELQLSKDYNH
0701: EPIATAPVGK NDYDPAMDEE MADFEAVSSP KDGTPIQLML GPSTVSQQSA DGHWVASVSS MACDFALAQK SPESQPTKVG KVGQPNFDAL FRNSLEKRRQ
0801: SHMEAMPSQV VSTPVMQERF PVTEFNYPVE NSVPQTVVIK DIEDEELTDI HQEVENDVVA SSQVEEVAEA KLKLILRIWR RRSSKRRELR EQRQLAASAA
0901: LDLLSLGPPI QHNEDQPSTF SEFNIDQIMR ERYQKHEQSW SRLNVSEVVA DKLSGRNPDS KCLCWKIIVC SQMNNPGGEN MGHRSQVAHF AAGTWLLSKL
1001: LPTRKDDDAG LVISLPGLSM WEKWMPSQSD ADMTCCLSIV VEAKFDNLNQ TALGASAVLF LVSESIPLEL QKVRLHNLLM SLPSGSCLPL LILSGTYKKD
1101: ASDPSSAIID ELGLNSIDRS RVSRFSVVFL VQDQQTEHTD GFFSDEQLRK GLYWLASESP LQPILHCVKT RELVLTHLNC SLEVLENMNI YEVGPDQCIS
1201: AFNDALDRSQ GEICVAADAN RTSWPCPEIA LLEESGHEHR AIKLYLPSIR WSSAARIEPL VCALRGCKLP TFPDDISWLN RGSSMGQEIE NQRSLLENCL
1301: IRYLTQLSKM MGLALAKREV HVMLQNSTKL ELHNSSYYIV PKWVMIFRRV FNWQLMSLSS GPASAAYVLE HYSAAPTKSG SSDKPGLEGS RSSPYCLIHP
1401: TLDEMVEVGC SPLLSRKGQS EPEPFQPLPR LVYDSSHVQE YNTNDLEEDE ENFVQGVELA ESNGYTYSTD GLRATGSREL VVVTEATMGA GKLSKLVEQC
1501: NRLQNMIDKK LSVYF
0001: MGTDAVEIGR SQDSKRKSRS DILPDQNMGF SRRNQSPVSG FENGNLVDGF QPLSSRTWMR SPSSAENNPV RSRSNPNQLI HQEQTGNSSF PYAHEVAEIQ
0101: EATRRKSSAV APSDKPLGDD PILSQHDSQR FSTSPPTSGT KSYTLSRSSD SQFPGQPSSV NSFNNARKTN SSPATKRTRS PPVYPIEEDI PRNSFPSQDC
0201: TEGEEQARAK RLARFKGELE PIADRPVDIQ LTKSPVNKTM KPLDNKQTFN SLESSRDALK GDALPDYENS EQPSLIIGVC PDMCPESERG ERERKGDLDH
0301: YERVDGDRNQ TSKSLAVKKY TRTAEREAIL IRPMPILQNT MEYLLSLLDR PYNENFLGMY NFLWDRMRAI RMDLRMQHIF NQEAITLLEQ MIRLHIIAMH
0401: ELCEYTKGEG FSEGFDAHLN IEQMNKTSVE LFQMYDDHRK KGITVPTEKE FRGYYALLKL DKHPGYKVEP SELSLDLANM TPEIRQTSEV LFARNVARAC
0501: RTGNFIAFFR LARKASYLQA CLMHAHFSKL RTQALASLHS GLQINQGLPV SDMSNWIGME EEDIEALLEY HGFSIKVFEE PYMVKNDLFL HADKDYKTKC
0601: SKLVHMKKSR TIVEDVSAPT VVEDVSTPFP LPSLITEATI GNQQCITAHK HEMPPARSLK KQTSMRLFDK EVADSKTSLL AEEDKPMGTF VMNPPGPFVI
0701: NPVVHQEKQN DLTSAGGFHS PVKLYSPFGS PKFPQTKSSN LEKQPNDDRI GMSPGEIKFS IIGDVYTNHV PGPALQQSPK SMPMEIMPVT TIAECPTSVE
0801: NKYALEESVP EAAMICTLEK EFNDIDEEDE DEDGVILNQY DEEVAKAKLK LIIRLWKRWS SRQSELRERR QLAAAAALNS LSLGTPIRFS KTDQSRACGE
0901: FNIDQAMRRR FEEREKSWSR LNISDVIADI LVGRNPESKC ISWKVVLCTQ TKSVNSSSSA SQVTHSAASR WLSSKLMPHA EHSSLNDDNL LFSAPGVSVW
1001: NKWVANGSDI DFTCCLSVAR DVEAENDMCE TTCGASAVLF LASGGLPLNL QREQLNLILE SVPNGSVLPL LVVISSCNGE HMEPDTDIVS GLGLHDIDKS
1101: KIASFSIVSI ANKSQKGQEV HFFNDSRLRD GFKWLASNSP LQPNLHHVKL RELFLTHFSF SLELLKQMPD QEVGPNICIS AFNDALETSR RNITSAAEAN
1201: PIGWPCPETM LLEDNRKECL MVKRYLPNLD WSSAENVELL SSVLENCKLP DFEDDLTWLT VGCASGAEIE NHTQRLEGCL IEYLTQRSNL MGVSLATKET
1301: GVMLERNTRL ELHNSSRYHI TPRWIGIFQR IFNWRIMGLF DASSSSAYVL KSDLNMSTSS YADKFLAEDA SYPSCPPNLP LLHEMIEISC SPLKSPPPYD
1401: DKAQRVVETG MLIDDHRDIE ESMLEKNREA CRGIDLMITE DDELGERSWR SKGREAAEKK TIEKRESERL DELLEKCNMV QNSIAEKLCI YF
0101: EATRRKSSAV APSDKPLGDD PILSQHDSQR FSTSPPTSGT KSYTLSRSSD SQFPGQPSSV NSFNNARKTN SSPATKRTRS PPVYPIEEDI PRNSFPSQDC
0201: TEGEEQARAK RLARFKGELE PIADRPVDIQ LTKSPVNKTM KPLDNKQTFN SLESSRDALK GDALPDYENS EQPSLIIGVC PDMCPESERG ERERKGDLDH
0301: YERVDGDRNQ TSKSLAVKKY TRTAEREAIL IRPMPILQNT MEYLLSLLDR PYNENFLGMY NFLWDRMRAI RMDLRMQHIF NQEAITLLEQ MIRLHIIAMH
0401: ELCEYTKGEG FSEGFDAHLN IEQMNKTSVE LFQMYDDHRK KGITVPTEKE FRGYYALLKL DKHPGYKVEP SELSLDLANM TPEIRQTSEV LFARNVARAC
0501: RTGNFIAFFR LARKASYLQA CLMHAHFSKL RTQALASLHS GLQINQGLPV SDMSNWIGME EEDIEALLEY HGFSIKVFEE PYMVKNDLFL HADKDYKTKC
0601: SKLVHMKKSR TIVEDVSAPT VVEDVSTPFP LPSLITEATI GNQQCITAHK HEMPPARSLK KQTSMRLFDK EVADSKTSLL AEEDKPMGTF VMNPPGPFVI
0701: NPVVHQEKQN DLTSAGGFHS PVKLYSPFGS PKFPQTKSSN LEKQPNDDRI GMSPGEIKFS IIGDVYTNHV PGPALQQSPK SMPMEIMPVT TIAECPTSVE
0801: NKYALEESVP EAAMICTLEK EFNDIDEEDE DEDGVILNQY DEEVAKAKLK LIIRLWKRWS SRQSELRERR QLAAAAALNS LSLGTPIRFS KTDQSRACGE
0901: FNIDQAMRRR FEEREKSWSR LNISDVIADI LVGRNPESKC ISWKVVLCTQ TKSVNSSSSA SQVTHSAASR WLSSKLMPHA EHSSLNDDNL LFSAPGVSVW
1001: NKWVANGSDI DFTCCLSVAR DVEAENDMCE TTCGASAVLF LASGGLPLNL QREQLNLILE SVPNGSVLPL LVVISSCNGE HMEPDTDIVS GLGLHDIDKS
1101: KIASFSIVSI ANKSQKGQEV HFFNDSRLRD GFKWLASNSP LQPNLHHVKL RELFLTHFSF SLELLKQMPD QEVGPNICIS AFNDALETSR RNITSAAEAN
1201: PIGWPCPETM LLEDNRKECL MVKRYLPNLD WSSAENVELL SSVLENCKLP DFEDDLTWLT VGCASGAEIE NHTQRLEGCL IEYLTQRSNL MGVSLATKET
1301: GVMLERNTRL ELHNSSRYHI TPRWIGIFQR IFNWRIMGLF DASSSSAYVL KSDLNMSTSS YADKFLAEDA SYPSCPPNLP LLHEMIEISC SPLKSPPPYD
1401: DKAQRVVETG MLIDDHRDIE ESMLEKNREA CRGIDLMITE DDELGERSWR SKGREAAEKK TIEKRESERL DELLEKCNMV QNSIAEKLCI YF
Arabidopsis Description
SAC3BSAC3 family protein B [Source:UniProtKB/Swiss-Prot;Acc:F4JAU2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.