Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G029080.1 | Barley | extracellular | 11.56 | 27.06 |
| KRH36229 | Soybean | nucleus | 55.53 | 21.88 |
| KRG92986 | Soybean | nucleus | 55.28 | 21.87 |
| AT2G39340.1 | Thale cress | nucleus | 46.98 | 18.59 |
| Bra005050.1-P | Field mustard | nucleus | 44.97 | 18.03 |
| Bra005052.1-P | Field mustard | nucleus | 44.97 | 18.03 |
| CDX74854 | Canola | nucleus | 44.97 | 18.03 |
| CDY44640 | Canola | nucleus | 45.23 | 17.87 |
| CDX93271 | Canola | nucleus | 42.96 | 17.34 |
| CDY07001 | Canola | nucleus | 42.46 | 17.21 |
| Bra017081.1-P | Field mustard | nucleus | 41.96 | 16.99 |
| Solyc05g054910.2.1 | Tomato | nucleus | 40.95 | 16.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.18 | 14.51 |
| Os01t0836400-02 | Rice | nucleus | 31.16 | 13.57 |
| OQU87820 | Sorghum | nucleus | 30.65 | 13.02 |
| TraesCS1A01G287600.8 | Wheat | nucleus | 31.66 | 13.0 |
| TraesCS1B01G297000.5 | Wheat | nucleus | 30.65 | 12.59 |
| TraesCS1D01G286500.8 | Wheat | nucleus | 30.4 | 12.54 |
| HORVU1Hr1G071780.21 | Barley | nucleus | 30.4 | 12.54 |
| OQU78144 | Sorghum | nucleus | 31.41 | 12.5 |
| Zm00001d010546_P003 | Maize | nucleus | 32.16 | 12.38 |
| Zm00001d038393_P012 | Maize | nucleus | 31.41 | 12.17 |
| TraesCS3A01G354400.3 | Wheat | nucleus | 28.64 | 10.56 |
| TraesCS3D01G348300.1 | Wheat | cytosol | 28.89 | 10.39 |
| TraesCS3B01G387400.1 | Wheat | nucleus | 29.15 | 10.35 |
| HORVU3Hr1G087140.16 | Barley | nucleus, plastid | 29.15 | 9.86 |
| Os05t0462600-01 | Rice | mitochondrion | 19.6 | 9.34 |
| VIT_13s0067g03720.t01 | Wine grape | plastid | 2.76 | 2.18 |
| Zm00001d003061_P001 | Maize | nucleus | 0.25 | 0.81 |
Protein Annotations
| ArrayExpress:VIT_13s0067g03680 | EMBL:FN595514 | EnsemblPlants:VIT_13s0067g03680.t01 | EnsemblPlantsGene:VIT_13s0067g03680 | PANTHER:PTHR12436 | PANTHER:PTHR12436:SF28 |
| ProteinID:CCB49756 | ProteinID:CCB49756.1 | SEG:seg | UniParc:UPI0002109E00 | UniProt:F6HC18 | MapMan:35.1 |
Description
No Description!
Coordinates
chr13:+:2066834..2070923
Molecular Weight (calculated)
42650.9 Da
IEP (calculated)
6.831
GRAVY (calculated)
-0.784
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSNSSYHHV QQTEPHLRNA QDGLNAASSV YPPSSLGAAS VPQQYNGYTT YPSSNDPYSY GNTGYPGYYS GYQQQSNHSY SQPVGANQNT GAPYQPLSSF
101: QNTGSYAGPA SYPSTYYNPG DYQTSGGHST SGYSNQSNLW SEGNYANYTH QYANYTPDSN GAYSSSTAAA TSLQYQQHYK QWADYYSQTE VSCAPGTENM
201: SVTSTSNLAC PIPGVTSGYS TSASHPPQPS ISSWGSENSS ALPSVQPGAA ISDTHDGYWK HGAPSFQNHH VSTVQPDFQK HLDTKPSYDS FQDQQKTACP
301: QGSNLQYPTA HKVSHSYQSP LQTIASLDTR RVNKLQIPTN PRIASNLALG LPKIDKDSSA TGGTAKPAYI GVSVPKPSDK VLSHDGADAI LKVCVGAL
101: QNTGSYAGPA SYPSTYYNPG DYQTSGGHST SGYSNQSNLW SEGNYANYTH QYANYTPDSN GAYSSSTAAA TSLQYQQHYK QWADYYSQTE VSCAPGTENM
201: SVTSTSNLAC PIPGVTSGYS TSASHPPQPS ISSWGSENSS ALPSVQPGAA ISDTHDGYWK HGAPSFQNHH VSTVQPDFQK HLDTKPSYDS FQDQQKTACP
301: QGSNLQYPTA HKVSHSYQSP LQTIASLDTR RVNKLQIPTN PRIASNLALG LPKIDKDSSA TGGTAKPAYI GVSVPKPSDK VLSHDGADAI LKVCVGAL
0001: MNHGGNTQAV APMDPNSIEN RYGVDGSQTQ KYSYQYSTGS ESAPWTGHSV ENQAVENGNY SNSNYYHPQP TGPATGNVQE IPNTVSFTIS STSGTANVAQ
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
Arabidopsis Description
SAC3ASAC3 family protein A [Source:UniProtKB/Swiss-Prot;Acc:F4IUY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.