Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G287600.8 | Wheat | nucleus | 98.45 | 98.45 |
| TraesCS1D01G286500.8 | Wheat | nucleus | 94.84 | 95.23 |
| HORVU1Hr1G071780.21 | Barley | nucleus | 93.09 | 93.47 |
| Os05t0462600-01 | Rice | mitochondrion | 60.47 | 70.18 |
| OQU78144 | Sorghum | nucleus | 71.1 | 68.9 |
| Zm00001d010546_P003 | Maize | nucleus | 70.59 | 66.15 |
| Zm00001d038393_P012 | Maize | nucleus | 68.11 | 64.26 |
| VIT_13s0067g03720.t01 | Wine grape | plastid | 29.0 | 55.75 |
| TraesCS3B01G387400.1 | Wheat | nucleus | 61.09 | 52.81 |
| Zm00001d003061_P001 | Maize | nucleus | 6.09 | 47.97 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.75 | 46.94 |
| Solyc05g054910.2.1 | Tomato | nucleus | 41.69 | 42.04 |
| KRG92986 | Soybean | nucleus | 43.03 | 41.45 |
| KRH36229 | Soybean | nucleus | 42.62 | 40.89 |
| CDX93271 | Canola | nucleus | 40.76 | 40.06 |
| CDX74854 | Canola | nucleus | 40.97 | 39.98 |
| Bra005052.1-P | Field mustard | nucleus | 40.87 | 39.88 |
| Bra005050.1-P | Field mustard | nucleus | 40.87 | 39.88 |
| CDY44640 | Canola | nucleus | 41.38 | 39.82 |
| AT2G39340.1 | Thale cress | nucleus | 41.18 | 39.66 |
| CDY07001 | Canola | nucleus | 39.94 | 39.41 |
| Bra017081.1-P | Field mustard | nucleus | 39.94 | 39.37 |
| VIT_13s0067g03680.t01 | Wine grape | nucleus | 12.59 | 30.65 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G297000.5 | EnsemblPlantsGene:TraesCS1B01G297000 | Gene3D:1.25.40.990 | InterPro:IPR000717 | InterPro:PCI_dom | InterPro:SAC3/GANP/THP3 |
| PANTHER:PTHR12436 | PANTHER:PTHR12436:SF28 | PFAM:PF03399 | PFscan:PS50250 | SEG:seg | MapMan:16.11.2.1 |
Description
No Description!
Coordinates
chr1B:-:516951501..516960351
Molecular Weight (calculated)
105938.0 Da
IEP (calculated)
8.561
GRAVY (calculated)
-0.685
Length
969 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHGAAPAA GSDAARVEVS GTGQTNQPAY PPLVSGDHSW STTTGAAAAG SWNYPVANQS QDAVYYDPQR DVSVSGDNQN VASSAPPAVQ STMGLTNASH
101: SHVPYSSSLQ HGYNPAEYAN YYYNYPQATN SCSVQQGGAN QHSGAAYQPL TSFQNSGSYV DPTSNTYYNA GGHQTAPGYA TTNYYYQTDT RNDGSSGNNY
201: AQSYQNYPSS DTNAAQSSSA VPANSFSYQQ QYNQWPYYYN HSVPTPAGNP VAGSSNIDNT VVNTTSGYSY PSMEPPPPGT TPWKSNSSAS VAPPVQAPSV
301: PEPQNQYVQQ AQVTPGFQNQ YAYQAPGVPV SQNYYASQAP AYPQNNMNVN QVPLNNHGDQ QKSPNMQGSL TTGIYSSENK TQIPIIPRIA PGFSMVIPKS
401: EKKIVGADLA KKPAYVSVSV PKNDGKAVQN GSDTRSLPFS LRNYAMRNLS RCKDEAQRAA CQTMIQQITS KAISNGTLLT KNWDTEPLIP LPENLLTMTE
501: TSANNSSSLP TSSTPKRRLK SRWEPVPEEK VTEKVEPLAK ALMNGNAHNN LKAQNTMGNS WNLGKSLQSP HAPSNKISHR LSKKQKMGSY SSVVQNGNTS
601: SDSDKEKDLT KYYANASALA NSPEEKKRRE HRSKRFEKSK DSSSKSRNSA VNKDAMARIH TRRPISALVT GSYKDGSSLA VEDMDWDALT VKGTCQEIEK
701: RYLRLTSAPD PSTVRPEHVL EKALSMVETS QKNYLYKCDQ LKSIRQDLTV QRIQNELTVK VYETHARLAL QAGDLPEFNQ CQSQLKRLYR EGNNGCYFEF
801: SAYNLLCVML HSNNKRDLLS SMASLSKEAK QDGAVKHALA VHAAVSSGNY VIFFKLYKQG PNLNSCLMDL YVERMRFEAI KCMSRSYRPT VPVGYVAQVL
901: GFLLDGEDRL EECEIWLKAH GAVLSVDNSG ELQIDTKASS STLFMPEPEN AVAHGDASLA VNDFFARTL
101: SHVPYSSSLQ HGYNPAEYAN YYYNYPQATN SCSVQQGGAN QHSGAAYQPL TSFQNSGSYV DPTSNTYYNA GGHQTAPGYA TTNYYYQTDT RNDGSSGNNY
201: AQSYQNYPSS DTNAAQSSSA VPANSFSYQQ QYNQWPYYYN HSVPTPAGNP VAGSSNIDNT VVNTTSGYSY PSMEPPPPGT TPWKSNSSAS VAPPVQAPSV
301: PEPQNQYVQQ AQVTPGFQNQ YAYQAPGVPV SQNYYASQAP AYPQNNMNVN QVPLNNHGDQ QKSPNMQGSL TTGIYSSENK TQIPIIPRIA PGFSMVIPKS
401: EKKIVGADLA KKPAYVSVSV PKNDGKAVQN GSDTRSLPFS LRNYAMRNLS RCKDEAQRAA CQTMIQQITS KAISNGTLLT KNWDTEPLIP LPENLLTMTE
501: TSANNSSSLP TSSTPKRRLK SRWEPVPEEK VTEKVEPLAK ALMNGNAHNN LKAQNTMGNS WNLGKSLQSP HAPSNKISHR LSKKQKMGSY SSVVQNGNTS
601: SDSDKEKDLT KYYANASALA NSPEEKKRRE HRSKRFEKSK DSSSKSRNSA VNKDAMARIH TRRPISALVT GSYKDGSSLA VEDMDWDALT VKGTCQEIEK
701: RYLRLTSAPD PSTVRPEHVL EKALSMVETS QKNYLYKCDQ LKSIRQDLTV QRIQNELTVK VYETHARLAL QAGDLPEFNQ CQSQLKRLYR EGNNGCYFEF
801: SAYNLLCVML HSNNKRDLLS SMASLSKEAK QDGAVKHALA VHAAVSSGNY VIFFKLYKQG PNLNSCLMDL YVERMRFEAI KCMSRSYRPT VPVGYVAQVL
901: GFLLDGEDRL EECEIWLKAH GAVLSVDNSG ELQIDTKASS STLFMPEPEN AVAHGDASLA VNDFFARTL
0001: MNHGGNTQAV APMDPNSIEN RYGVDGSQTQ KYSYQYSTGS ESAPWTGHSV ENQAVENGNY SNSNYYHPQP TGPATGNVQE IPNTVSFTIS STSGTANVAQ
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
Arabidopsis Description
SAC3ASAC3 family protein A [Source:UniProtKB/Swiss-Prot;Acc:F4IUY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.