Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra001190.1-P | |
| Bra020761.1-P | |
| Bra040682.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39340.1 | Bra040682.1-P | AT2G19560.1 | 19843313 |
| AT2G39340.1 | Bra001190.1-P | AT3G06290.1 | 19843313 |
| AT2G39340.1 | Bra020761.1-P | AT3G06290.1 | 19843313 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005050.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX74854 | Canola | nucleus | 98.99 | 98.99 |
| Bra017081.1-P | Field mustard | nucleus | 77.44 | 78.23 |
| AT2G39340.1 | Thale cress | nucleus | 78.65 | 77.63 |
| VIT_13s0067g03720.t01 | Wine grape | plastid | 30.92 | 60.91 |
| KRG92986 | Soybean | nucleus | 50.65 | 50.0 |
| KRH36229 | Soybean | nucleus | 50.35 | 49.51 |
| Solyc05g054910.2.1 | Tomato | nucleus | 44.21 | 45.68 |
| VIT_13s0067g03680.t01 | Wine grape | nucleus | 18.03 | 44.97 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.0 | 44.25 |
| Os05t0462600-01 | Rice | mitochondrion | 36.35 | 43.23 |
| TraesCS1D01G286500.8 | Wheat | nucleus | 40.38 | 41.55 |
| HORVU1Hr1G071780.21 | Barley | nucleus | 40.38 | 41.55 |
| TraesCS1B01G297000.5 | Wheat | nucleus | 39.88 | 40.87 |
| TraesCS1A01G287600.8 | Wheat | nucleus | 39.78 | 40.76 |
| OQU87820 | Sorghum | nucleus | 37.97 | 40.23 |
| OQU78144 | Sorghum | nucleus | 39.68 | 39.4 |
| Os01t0836400-02 | Rice | nucleus | 35.95 | 39.06 |
| Zm00001d010546_P003 | Maize | nucleus | 40.58 | 38.97 |
| TraesCS3A01G354400.3 | Wheat | nucleus | 40.48 | 37.22 |
| Zm00001d038393_P012 | Maize | nucleus | 37.76 | 36.51 |
| TraesCS3D01G348300.1 | Wheat | cytosol | 40.28 | 36.13 |
| Zm00001d003061_P001 | Maize | nucleus | 4.43 | 35.77 |
| TraesCS3B01G387400.1 | Wheat | nucleus | 40.18 | 35.59 |
| HORVU3Hr1G087140.16 | Barley | nucleus, plastid | 39.78 | 33.59 |
| HORVU1Hr1G029080.1 | Barley | extracellular | 5.54 | 32.35 |
Protein Annotations
| EnsemblPlants:Bra005052.1 | EnsemblPlants:Bra005052.1-P | EnsemblPlantsGene:Bra005052 | Gene3D:1.25.40.990 | InterPro:IPR000717 | InterPro:PCI_dom |
| InterPro:SAC3/GANP/THP3 | PANTHER:PTHR12436 | PANTHER:PTHR12436:SF28 | PFAM:PF03399 | PFscan:PS50250 | SEG:seg |
| UniParc:UPI00025474D8 | UniProt:M4CLG5 | MapMan:16.11.2.1 | : | : | : |
Description
AT2G39340 (E=0.0) | SAC3/GANP family protein
Coordinates
chrA05:-:3179226..3184253
Molecular Weight (calculated)
109723.0 Da
IEP (calculated)
7.904
GRAVY (calculated)
-0.840
Length
993 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQGGGNTQT VAPLDPNSIE KRYGVDGSQV QISPYQYSIG SHTVVDNQVV QNGNYSNSNY YHHPPQPPLT GNVQETPNTI SSTSGTANVA QDYSGYTPYQ
101: TSSDTPQNYS NAGYSNYYSG YQQQQQQQNQ NTGAPYQPIS SFQNPGSYPA ATASYSGTYY NPADYQTNGG YQTTNYNNQS AGGYQSTTYS NQAPTPNQGN
201: YSANPYQNYT PDTTNTHSST VASATTTPVH YQQSYQQWPA YYSQTEVVPC APGTEKLSAT SAVSQSFPVP GVTNETPASN VQPAPSYSQP WRQETNLSQP
301: SSQQPAAAVS ASNDAYWKHQ TQNQQAHYPV PPQNHYQGPL VTKPLYETPF QGHQRATYPQ GMNSQSSVHQ APLGYRQPTQ TTPSVDTQRV SKIQIPTNPR
401: IASNLPSGYT KMDKGSSAAG ATQTPAYVSV SMPKPKVHAT PVPEPGTLPK SLCGFVERAF ARCKDDKEKA SCQAALKKVI TEARDDGTLH TRDWDTEPLS
501: TVLNTDVTNT ESSSTLISSL QNKSPTKRPK SRWEPLVEKP FVKSASTFSS GVKFGGWNQQ NQNNKKSFES FQKADAVTDS KPTYSWQNSK PAYSWQNSAK
601: KSFQRPVKRQ RFSGGADDEA SSDSDKDSTP SAMSFATSAE ETKRRDSRSK RFEKVQGHSR RNDIPKPMNA NVGNLHSRRG TALRFGEDFD ESGCRSVEDI
701: DWNALTVKGT CQEIEKRYFR LTSAPDPSAV RPEDVLEKAL LMVQDSQKNY LYKCDQLKSI RQDLTVQRIH NHLTVKVYET HARLALEAGD LPEYNQCLSQ
801: LKTLYADGIE GCSLEFAAYS LLYITLHSNN NRELLSSMSR LSKEAKKDEA VRHALSVRAA VTSGNYVMFF RLYKTAPNMN SFLMDLYVEK MRYKAVTVMS
901: RSCRPTIPVS YLAQVLGFTN TSSEGSGEKE TDSMEACSEW LKAHGASLIA DSNGDMLLDT KVSTTNLFMP EPEDAVAHGD KNLDVNDFFT RTS
101: TSSDTPQNYS NAGYSNYYSG YQQQQQQQNQ NTGAPYQPIS SFQNPGSYPA ATASYSGTYY NPADYQTNGG YQTTNYNNQS AGGYQSTTYS NQAPTPNQGN
201: YSANPYQNYT PDTTNTHSST VASATTTPVH YQQSYQQWPA YYSQTEVVPC APGTEKLSAT SAVSQSFPVP GVTNETPASN VQPAPSYSQP WRQETNLSQP
301: SSQQPAAAVS ASNDAYWKHQ TQNQQAHYPV PPQNHYQGPL VTKPLYETPF QGHQRATYPQ GMNSQSSVHQ APLGYRQPTQ TTPSVDTQRV SKIQIPTNPR
401: IASNLPSGYT KMDKGSSAAG ATQTPAYVSV SMPKPKVHAT PVPEPGTLPK SLCGFVERAF ARCKDDKEKA SCQAALKKVI TEARDDGTLH TRDWDTEPLS
501: TVLNTDVTNT ESSSTLISSL QNKSPTKRPK SRWEPLVEKP FVKSASTFSS GVKFGGWNQQ NQNNKKSFES FQKADAVTDS KPTYSWQNSK PAYSWQNSAK
601: KSFQRPVKRQ RFSGGADDEA SSDSDKDSTP SAMSFATSAE ETKRRDSRSK RFEKVQGHSR RNDIPKPMNA NVGNLHSRRG TALRFGEDFD ESGCRSVEDI
701: DWNALTVKGT CQEIEKRYFR LTSAPDPSAV RPEDVLEKAL LMVQDSQKNY LYKCDQLKSI RQDLTVQRIH NHLTVKVYET HARLALEAGD LPEYNQCLSQ
801: LKTLYADGIE GCSLEFAAYS LLYITLHSNN NRELLSSMSR LSKEAKKDEA VRHALSVRAA VTSGNYVMFF RLYKTAPNMN SFLMDLYVEK MRYKAVTVMS
901: RSCRPTIPVS YLAQVLGFTN TSSEGSGEKE TDSMEACSEW LKAHGASLIA DSNGDMLLDT KVSTTNLFMP EPEDAVAHGD KNLDVNDFFT RTS
0001: MNHGGNTQAV APMDPNSIEN RYGVDGSQTQ KYSYQYSTGS ESAPWTGHSV ENQAVENGNY SNSNYYHPQP TGPATGNVQE IPNTVSFTIS STSGTANVAQ
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
Arabidopsis Description
SAC3ASAC3 family protein A [Source:UniProtKB/Swiss-Prot;Acc:F4IUY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.