Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005050.1-P | |
| Bra005052.1-P | |
| Bra017081.1-P | |
| Bra040682.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G06290.1 | Bra040682.1-P | AT2G19560.1 | 19843313 |
| AT3G06290.1 | Bra005050.1-P | AT2G39340.1 | 19843313 |
| AT3G06290.1 | Bra005052.1-P | AT2G39340.1 | 19843313 |
| AT3G06290.1 | Bra017081.1-P | AT2G39340.1 | 19843313 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24705 | Canola | cytosol, plastid | 59.26 | 80.33 |
| Bra001190.1-P | Field mustard | plastid | 73.22 | 73.54 |
| CDY05249 | Canola | nucleus | 50.82 | 72.09 |
| AT3G06290.1 | Thale cress | plastid | 72.19 | 70.06 |
| VIT_05s0020g02350.t01 | Wine grape | nucleus | 38.74 | 42.11 |
| KRH20952 | Soybean | nucleus | 36.92 | 40.29 |
| GSMUA_Achr5P27420_001 | Banana | cytosol | 30.18 | 39.82 |
| KRH11322 | Soybean | nucleus | 36.98 | 39.14 |
| Solyc12g035670.1.1 | Tomato | nucleus | 36.67 | 38.59 |
| Bra003181.1-P | Field mustard | mitochondrion, plastid | 7.41 | 31.69 |
| HORVU2Hr1G025040.2 | Barley | plastid | 20.22 | 31.15 |
| TraesCS2D01G144800.1 | Wheat | plastid | 31.09 | 31.01 |
| Zm00001d022343_P001 | Maize | plastid | 31.88 | 28.96 |
| TraesCS2A01G141300.1 | Wheat | cytosol | 31.09 | 28.93 |
| TraesCS2B01G166300.1 | Wheat | cytosol | 30.97 | 28.49 |
| OQU90370 | Sorghum | plastid | 30.42 | 28.32 |
| Zm00001d022344_P001 | Maize | cytosol | 19.55 | 26.48 |
| Zm00001d022346_P001 | Maize | cytosol | 27.08 | 16.27 |
Protein Annotations
| EnsemblPlants:Bra020761.1 | EnsemblPlants:Bra020761.1-P | EnsemblPlantsGene:Bra020761 | Gene3D:1.25.40.990 | InterPro:IPR000717 | InterPro:PCI_dom |
| InterPro:SAC3/GANP/THP3 | PANTHER:PTHR12436 | PANTHER:PTHR12436:SF17 | PFAM:PF03399 | PFscan:PS50250 | SEG:seg |
| UniParc:UPI0002545F5E | UniProt:M4DW67 | MapMan:16.11.2.1 | : | : | : |
Description
AT3G06290 (E=0.0) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP family protein (TAIR:AT3G54380.1); Has 1341 Blast hits to 841 proteins in 168 species: Archae - 0; Bacteria - 24; Metazoa - 448; Fungi - 228; Plants - 85; Viruses - 0; Other Eukaryotes - 556 (source: NCBI BLink).
Coordinates
chrA02:-:23224830..23232563
Molecular Weight (calculated)
184117.0 Da
IEP (calculated)
6.629
GRAVY (calculated)
-0.617
Length
1647 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAFKPFGKDV GPAMSSKPSP FTTFGASDPT QSTSDSPIQP ATSQHHSGYA GRSFGPGGIQ SGPPIQRAPS PSASQNPSPF VGQPYRPGGV QSSPTMNRTS
0101: PPVAFQNPSH SSGQSYRPGG TQRSPGPVNL HWGPEAFPRP STSVRPYKFP GVQRPTLNPQ FGHDESRNFQ NDHSERSLAT SSASTSHTLS RSVTDVVEIG
0201: RSQDSKRKSR SDVLPDRSLG VSRRNHSPGS GFGNGRLVDD FQQSSSQTWI RSPSSADNNP VRSRINPNRL IHQEQSPSSS FPYAHEAAET QEATKRKSSV
0301: TPSDSPLHNN PVFSQDDTRR SSTSPPGTKS FMLSRSSDSQ FTGQSSVNNF SNAVKTSSSP ATKRTRSPPL NPVEDDIQGN SFLSQSFTEG EEQARAKRLA
0401: RFKGELDPVP TRPVDTQLAK SSPNKTVKPL DNKQIFNSQE ANRDVHKGDA LSDFESSEQP SLIVGLCPDM CPESERGERE RKGDLDHYER VDGDRNQTSK
0501: SLAVKKYTRT AEREAILIRP MPILQNTMEY LLSLLDRPYN ENFLGMYNFL WDRMRAIRMD LRMQHIFNRE AITLLEQMIR LHIIAMHELC EYTKGEGFSE
0601: GFDAHLNIEQ MNKTSVELFQ MYDDHRKRGI TIPTEKEFRG YYALLKLDKH PGYKVEPSEL SLDLANMTPE IRQTSEVLFA RSVARACRTG NFIAFFRLAR
0701: KASYLQACIM HAHFSKLRTQ ALASLHAGLQ NNQGLPVSDT SKWIGMEEED IEALLEYHGF SIKEFEEPYM VKDDLFLHAD KDYKTKCSKL VHMKKSRTIV
0801: EDVSAPSIEE DVPASSPLSS LSIEANKGYQ QETPPPQSLK KQTSLRLVDK EMADSKTSLL LEEDKPVKTS VINPVRPSDV KPAVDQQKGN HFTPAGEFHS
0901: PPKFYSPGFP QAESLNLKKQ PNDGHTSISP AEINFPFAEH MQTNLVPVPT LQQSPKSMPM ENVSVATKIE SPRSVENIFA LEESVPEAAM TVTLEEGFHD
1001: IEQEDEDGHE DITSQYDEEV AKAKLKLIIR LWKRWSSRQS ELRERRQLAA AAALNSLTLG TPIRLSKTDQ SRACGEFDID QAMKRRFEER EKSWSKLNIS
1101: DVIADILVER NPDSKCIWWK VILCTQIKSV DSSSQDTHAA ASRWLSSKLI PDTEHTISDA NLLFAAPGVS VWNKWVASGS DSDSRCCLSV ARDVESDNDP
1201: RGASAVLFLA SKGIPLNLQR EHLNRILESV PNGSLLPLLV LTSSSNGESV DPDTNLASEL GLHDIDKSKI ASFTVVSIAN NSQKGHEVRF FSDSRLRDGL
1301: KWLASNSPPQ PNLQHVKPRE LVLTHLSFSL ELLKQMRDQE VGPNICISAF NDALETSKRN IASAAEANPI CWPGPETMLL EDNRKEHLMA KRYLPNVDWS
1401: SAESIEPLNS VLENCKLPCF EDDFTWLTLG CASGAEIENH TQRLEGCVVE YLTQTSNLMG DSLASKEARV MLQRNATLEL HNSSYYHVIP RWIGIFQRIF
1501: NWRIMGVLDS SSSSAYVLKS DLTMSASSYA VKFLSEDSFS RPNLPLLHEM VLISCTPLKS SPKVESVQTE RLVDDHRDID ESMLEKTREA SRRIDMMITE
1601: DDELAVKRKK AAEKKTVKDR DSERLNELLE KCNLVQNSIA EKLCIYF
0101: PPVAFQNPSH SSGQSYRPGG TQRSPGPVNL HWGPEAFPRP STSVRPYKFP GVQRPTLNPQ FGHDESRNFQ NDHSERSLAT SSASTSHTLS RSVTDVVEIG
0201: RSQDSKRKSR SDVLPDRSLG VSRRNHSPGS GFGNGRLVDD FQQSSSQTWI RSPSSADNNP VRSRINPNRL IHQEQSPSSS FPYAHEAAET QEATKRKSSV
0301: TPSDSPLHNN PVFSQDDTRR SSTSPPGTKS FMLSRSSDSQ FTGQSSVNNF SNAVKTSSSP ATKRTRSPPL NPVEDDIQGN SFLSQSFTEG EEQARAKRLA
0401: RFKGELDPVP TRPVDTQLAK SSPNKTVKPL DNKQIFNSQE ANRDVHKGDA LSDFESSEQP SLIVGLCPDM CPESERGERE RKGDLDHYER VDGDRNQTSK
0501: SLAVKKYTRT AEREAILIRP MPILQNTMEY LLSLLDRPYN ENFLGMYNFL WDRMRAIRMD LRMQHIFNRE AITLLEQMIR LHIIAMHELC EYTKGEGFSE
0601: GFDAHLNIEQ MNKTSVELFQ MYDDHRKRGI TIPTEKEFRG YYALLKLDKH PGYKVEPSEL SLDLANMTPE IRQTSEVLFA RSVARACRTG NFIAFFRLAR
0701: KASYLQACIM HAHFSKLRTQ ALASLHAGLQ NNQGLPVSDT SKWIGMEEED IEALLEYHGF SIKEFEEPYM VKDDLFLHAD KDYKTKCSKL VHMKKSRTIV
0801: EDVSAPSIEE DVPASSPLSS LSIEANKGYQ QETPPPQSLK KQTSLRLVDK EMADSKTSLL LEEDKPVKTS VINPVRPSDV KPAVDQQKGN HFTPAGEFHS
0901: PPKFYSPGFP QAESLNLKKQ PNDGHTSISP AEINFPFAEH MQTNLVPVPT LQQSPKSMPM ENVSVATKIE SPRSVENIFA LEESVPEAAM TVTLEEGFHD
1001: IEQEDEDGHE DITSQYDEEV AKAKLKLIIR LWKRWSSRQS ELRERRQLAA AAALNSLTLG TPIRLSKTDQ SRACGEFDID QAMKRRFEER EKSWSKLNIS
1101: DVIADILVER NPDSKCIWWK VILCTQIKSV DSSSQDTHAA ASRWLSSKLI PDTEHTISDA NLLFAAPGVS VWNKWVASGS DSDSRCCLSV ARDVESDNDP
1201: RGASAVLFLA SKGIPLNLQR EHLNRILESV PNGSLLPLLV LTSSSNGESV DPDTNLASEL GLHDIDKSKI ASFTVVSIAN NSQKGHEVRF FSDSRLRDGL
1301: KWLASNSPPQ PNLQHVKPRE LVLTHLSFSL ELLKQMRDQE VGPNICISAF NDALETSKRN IASAAEANPI CWPGPETMLL EDNRKEHLMA KRYLPNVDWS
1401: SAESIEPLNS VLENCKLPCF EDDFTWLTLG CASGAEIENH TQRLEGCVVE YLTQTSNLMG DSLASKEARV MLQRNATLEL HNSSYYHVIP RWIGIFQRIF
1501: NWRIMGVLDS SSSSAYVLKS DLTMSASSYA VKFLSEDSFS RPNLPLLHEM VLISCTPLKS SPKVESVQTE RLVDDHRDID ESMLEKTREA SRRIDMMITE
1601: DDELAVKRKK AAEKKTVKDR DSERLNELLE KCNLVQNSIA EKLCIYF
0001: MAFRPFGKDL GPMSSKPAPF TPFGASSTTS DSSIQPPASQ NHSAFAGQSF GPGGIRSGPS IQRAPPLSAS QNPQLSIGKP YRPGGVQSVP PINRIPSPSA
0101: FQNPSPSSGQ PYQPGGIQRI PEPFNGIAWG PEASRTSPSV RPYQFPGVQR PNLNPQYGHD GSRNFLKDHG EHSRATSPPA TSHILSRMGT DAVEIGRSQD
0201: SKRKSRSDIL PDQNMGFSRR NQSPVSGFEN GNLVDGFQPL SSRTWMRSPS SAENNPVRSR SNPNQLIHQE QTGNSSFPYA HEVAEIQEAT RRKSSAVAPS
0301: DKPLGDDPIL SQHDSQRFST SPPTSGTKSY TLSRSSDSQF PGQPSSVNSF NNARKTNSSP ATKRTRSPPV YPIEEDIPRN SFPSQDCTEG EEQARAKRLA
0401: RFKGELEPIA DRPVDIQLTK SPVNKTMKPL DNKQTFNSLE SSRDALKGDA LPDYENSEQP SLIIGVCPDM CPESERGERE RKGDLDHYER VDGDRNQTSK
0501: SLAVKKYTRT AEREAILIRP MPILQNTMEY LLSLLDRPYN ENFLGMYNFL WDRMRAIRMD LRMQHIFNQE AITLLEQMIR LHIIAMHELC EYTKGEGFSE
0601: GFDAHLNIEQ MNKTSVELFQ MYDDHRKKGI TVPTEKEFRG YYALLKLDKH PGYKVEPSEL SLDLANMTPE IRQTSEVLFA RNVARACRTG NFIAFFRLAR
0701: KASYLQACLM HAHFSKLRTQ ALASLHSGLQ INQGLPVSDM SNWIGMEEED IEALLEYHGF SIKVFEEPYM VKNDLFLHAD KDYKTKCSKL VHMKKSRTIV
0801: EDVSAPTVVE DVSTPFPLPS LITEATIGNQ QCITAHKHEM PPARSLKKQT SMRLFDKEVA DSKTSLLAEE DKPMGTFVMN PPGPFVINPV VHQEKQNDLT
0901: SAGGFHSPVK LYSPFGSPKF PQTKSSNLEK QPNDDRIGMS PGEIKFSIIG DVYTNHVPGP ALQQSPKSMP MEIMPVTTIA ECPTSVENKY ALEESVPEAA
1001: MICTLEKEFN DIDEEDEDED GVILNQYDEE VAKAKLKLII RLWKRWSSRQ SELRERRQLA AAAALNSLSL GTPIRFSKTD QSRACGEFNI DQAMRRRFEE
1101: REKSWSRLNI SDVIADILVG RNPESKCISW KVVLCTQTKS VNSSSSASQV THSAASRWLS SKLMPHAEHS SLNDDNLLFS APGVSVWNKW VANGSDIDFT
1201: CCLSVARDVE AENDMCETTC GASAVLFLAS GGLPLNLQRE QLNLILESVP NGSVLPLLVV ISSCNGEHME PDTDIVSGLG LHDIDKSKIA SFSIVSIANK
1301: SQKGQEVHFF NDSRLRDGFK WLASNSPLQP NLHHVKLREL FLTHFSFSLE LLKQMPDQEV GPNICISAFN DALETSRRNI TSAAEANPIG WPCPETMLLE
1401: DNRKECLMVK RYLPNLDWSS AENVELLSSV LENCKLPDFE DDLTWLTVGC ASGAEIENHT QRLEGCLIEY LTQRSNLMGV SLATKETGVM LERNTRLELH
1501: NSSRYHITPR WIGIFQRIFN WRIMGLFDAS SSSAYVLKSD LNMSTSSYAD KFLAEDASYP SCPPNLPLLH EMIEISCSPL KSPPPYDDKA QRVVETGMLI
1601: DDHRDIEESM LEKNREACRG IDLMITEDDE LGERSWRSKG REAAEKKTIE KRESERLDEL LEKCNMVQNS IAEKLCIYF
0101: FQNPSPSSGQ PYQPGGIQRI PEPFNGIAWG PEASRTSPSV RPYQFPGVQR PNLNPQYGHD GSRNFLKDHG EHSRATSPPA TSHILSRMGT DAVEIGRSQD
0201: SKRKSRSDIL PDQNMGFSRR NQSPVSGFEN GNLVDGFQPL SSRTWMRSPS SAENNPVRSR SNPNQLIHQE QTGNSSFPYA HEVAEIQEAT RRKSSAVAPS
0301: DKPLGDDPIL SQHDSQRFST SPPTSGTKSY TLSRSSDSQF PGQPSSVNSF NNARKTNSSP ATKRTRSPPV YPIEEDIPRN SFPSQDCTEG EEQARAKRLA
0401: RFKGELEPIA DRPVDIQLTK SPVNKTMKPL DNKQTFNSLE SSRDALKGDA LPDYENSEQP SLIIGVCPDM CPESERGERE RKGDLDHYER VDGDRNQTSK
0501: SLAVKKYTRT AEREAILIRP MPILQNTMEY LLSLLDRPYN ENFLGMYNFL WDRMRAIRMD LRMQHIFNQE AITLLEQMIR LHIIAMHELC EYTKGEGFSE
0601: GFDAHLNIEQ MNKTSVELFQ MYDDHRKKGI TVPTEKEFRG YYALLKLDKH PGYKVEPSEL SLDLANMTPE IRQTSEVLFA RNVARACRTG NFIAFFRLAR
0701: KASYLQACLM HAHFSKLRTQ ALASLHSGLQ INQGLPVSDM SNWIGMEEED IEALLEYHGF SIKVFEEPYM VKNDLFLHAD KDYKTKCSKL VHMKKSRTIV
0801: EDVSAPTVVE DVSTPFPLPS LITEATIGNQ QCITAHKHEM PPARSLKKQT SMRLFDKEVA DSKTSLLAEE DKPMGTFVMN PPGPFVINPV VHQEKQNDLT
0901: SAGGFHSPVK LYSPFGSPKF PQTKSSNLEK QPNDDRIGMS PGEIKFSIIG DVYTNHVPGP ALQQSPKSMP MEIMPVTTIA ECPTSVENKY ALEESVPEAA
1001: MICTLEKEFN DIDEEDEDED GVILNQYDEE VAKAKLKLII RLWKRWSSRQ SELRERRQLA AAAALNSLSL GTPIRFSKTD QSRACGEFNI DQAMRRRFEE
1101: REKSWSRLNI SDVIADILVG RNPESKCISW KVVLCTQTKS VNSSSSASQV THSAASRWLS SKLMPHAEHS SLNDDNLLFS APGVSVWNKW VANGSDIDFT
1201: CCLSVARDVE AENDMCETTC GASAVLFLAS GGLPLNLQRE QLNLILESVP NGSVLPLLVV ISSCNGEHME PDTDIVSGLG LHDIDKSKIA SFSIVSIANK
1301: SQKGQEVHFF NDSRLRDGFK WLASNSPLQP NLHHVKLREL FLTHFSFSLE LLKQMPDQEV GPNICISAFN DALETSRRNI TSAAEANPIG WPCPETMLLE
1401: DNRKECLMVK RYLPNLDWSS AENVELLSSV LENCKLPDFE DDLTWLTVGC ASGAEIENHT QRLEGCLIEY LTQRSNLMGV SLATKETGVM LERNTRLELH
1501: NSSRYHITPR WIGIFQRIFN WRIMGLFDAS SSSAYVLKSD LNMSTSSYAD KFLAEDASYP SCPPNLPLLH EMIEISCSPL KSPPPYDDKA QRVVETGMLI
1601: DDHRDIEESM LEKNREACRG IDLMITEDDE LGERSWRSKG REAAEKKTIE KRESERLDEL LEKCNMVQNS IAEKLCIYF
Arabidopsis Description
SAC3BSAC3 family protein B [Source:UniProtKB/Swiss-Prot;Acc:F4JAU2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.