Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g090810.2.1 | |
| Solyc04g026350.2.1 | |
| Solyc05g054910.2.1 | |
| Solyc07g039210.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0020g02350.t01 | Wine grape | nucleus | 42.24 | 43.63 |
| KRH20952 | Soybean | nucleus | 39.11 | 40.56 |
| GSMUA_Achr5P27420_001 | Banana | cytosol | 32.27 | 40.46 |
| KRH11322 | Soybean | nucleus | 39.81 | 40.04 |
| CDY08059 | Canola | cytosol, plastid | 23.07 | 37.49 |
| Bra020761.1-P | Field mustard | cytosol | 38.59 | 36.67 |
| CDY05249 | Canola | nucleus | 26.33 | 35.49 |
| AT3G06290.1 | Thale cress | plastid | 38.34 | 35.36 |
| Bra001190.1-P | Field mustard | plastid | 37.0 | 35.3 |
| CDY24705 | Canola | cytosol, plastid | 27.35 | 35.23 |
| CDX74111 | Canola | plastid | 36.55 | 34.71 |
| HORVU2Hr1G025040.2 | Barley | plastid | 22.04 | 32.27 |
| TraesCS2D01G144800.1 | Wheat | plastid | 33.87 | 32.1 |
| CDY70818 | Canola | mitochondrion | 7.8 | 32.02 |
| TraesCS2A01G141300.1 | Wheat | cytosol | 33.8 | 29.89 |
| OQU90370 | Sorghum | plastid | 33.61 | 29.73 |
| TraesCS2B01G166300.1 | Wheat | cytosol | 33.8 | 29.55 |
| Zm00001d022343_P001 | Maize | plastid | 34.19 | 29.51 |
| Zm00001d022344_P001 | Maize | cytosol | 21.66 | 27.88 |
| Solyc06g061120.2.1 | Tomato | plastid | 7.22 | 27.1 |
| Zm00001d022346_P001 | Maize | cytosol | 28.63 | 16.34 |
Protein Annotations
| Gene3D:1.25.40.990 | MapMan:16.11.2.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0034399 |
| GO:GO:0040029 | GO:GO:0044030 | GO:GO:0060968 | GO:GO:0090065 | InterPro:IPR000717 | UniProt:K4DE24 |
| InterPro:PCI_dom | PFAM:PF03399 | PFscan:PS50250 | PANTHER:PTHR12436 | PANTHER:PTHR12436:SF17 | InterPro:SAC3/GANP/THP3 |
| EnsemblPlantsGene:Solyc12g035670.1 | EnsemblPlants:Solyc12g035670.1.1 | UniParc:UPI0002769E87 | SEG:seg | : | : |
Description
SAC3 family protein B [Source:Projected from Arabidopsis thaliana (AT3G06290) UniProtKB/Swiss-Prot;Acc:F4JAU2]
Coordinates
chr12:-:54473774..54494013
Molecular Weight (calculated)
176797.0 Da
IEP (calculated)
5.673
GRAVY (calculated)
-0.531
Length
1565 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAFQGFGKNT GPIAPPKAQT PFGNSRTPST SDTLPKWGNG HKYIYHDYDA QAHQQSPQLV PSLPENALST SVRGSQLQDL RTTGPHTSFS SDAEIPGASM
0101: TMRGSRSDLI SSDQCPFVSQ QNQSSPLFQN ESPLVPKSTR SPPLAFHNNL HTEANIPPLG GAQRPSLPPH MRGNSTQSFQ NLPIRLPHQR LPSIPTNYDP
0201: GRQIAVKHAD QVSKRTRSPP HSPPNVASFE KSALGLRESK RPSTSPSKLR SNAPPDSLAP QSSMSGYGVN VGVDLSKPMN FPVSKRTKFP SVPSSDQVLQ
0301: YDSNHADEDI QRETEAKAKR LARFKDDLSR QNARDDSSIP QKGPSTRMSQ YQSVVDRPKF SAEDIVDSSD DFSDGNLLSD YQGSESSGVI IGSCPDMCPE
0401: SERAERERKG DLDQYERLDG DRNQTSKLLA VKKYTRTAER EAVLIRPMPI LQKTMDYLLN LLEQPYGESF LRLYNFLWDR MRAIRMDLRM QHIFNREAIN
0501: MLEQMIRLHI LAMHELCEYT RGEGFSEGFD AHLNIEQMNK TSVELFQLYD DHRKRGINVE TEREFRGYYA LLKLDKHPGY KVDPAELSLD LAKMAPDMRQ
0601: TPEVLFARDV ARACRTGNFI AFFRLARRAS YLQACLMHAH FSKLRTQALA SLHSGLQNSQ GIPVNQVSKW LGMEDEDIEG LLEYYGFSLK EFEEPYMVKE
0701: GPFMEVDNDY PVKCSKLVHK KKSRTIFEDV SVPHVVSVTE KKRETLLDKD HQQKPSAFQF LKPDHSSLPI EENMHDYETV SSRKDEIEAI PITKTEFYQE
0801: TKYGSQQDPP SRAVSSLLAP PLVFFPHMSP EVQQQARVRS AEKPEVQLQA RVGSSGTPKN DEVAQFDARS MPIQFIPARD EWDSSPVLPA SSLVEDTELK
0901: HMSDEENEDE ELVITSEEAE TNEPAASYYD EEVAEAKLKL IIRKWKRRSL KKREMREEKQ LASKAALSSL SLGVPMWPNR IQHSTTVEFN IDHAVSKWYR
1001: TLEKSWSRLN VSDVVATTLY EKNAAARCLC WKVIICCEDN NINNLNPKNG VDQLNAKSWL LSKLMPARED EDDTLITSPG LSVWRNWILN ESGGDLICCL
1101: SVIKYSNFEN LNETVAGASA VLFLLSEGIP WVLQKNQLHR LLMSVPSGSQ LPLLIVSELC KENADPSTIV KELELHEVHE SRLHSFSVVY LKNQQMEQLN
1201: GFFSDEQLRG GLKWLASESP PQPVIQCVKV RELVLYHLNS LLGVLGEMNV CDVGPDNCIS AFNEALDQSM REIAAAAHAN PTCWPCPEIG LLEEHSHEHE
1301: AVTQHLPQTG WSLAPRIEPV VRAISDCKFP SFLDDTSWLH RGSDVDLKSQ ILQLQSCLTK YFTEISKLMV LPLAEKEASV MMQKFVQLQL QNSYYYIVPN
1401: WVMIFQRAFN WQLMKLAKET SFSVYILIKH DLSTSMLGAV ELEASAQPHY HLSHPSLDEM VEAGRMPLLG CAMLDGEGRA FQPYPGMTSD SEEIPTTTGA
1501: CNEIEDGKDV EYVKASYNGM EDLNEGESEP LMTIKEMKET DKLGELLDRC KIKQNMIDEN LSIYF
0101: TMRGSRSDLI SSDQCPFVSQ QNQSSPLFQN ESPLVPKSTR SPPLAFHNNL HTEANIPPLG GAQRPSLPPH MRGNSTQSFQ NLPIRLPHQR LPSIPTNYDP
0201: GRQIAVKHAD QVSKRTRSPP HSPPNVASFE KSALGLRESK RPSTSPSKLR SNAPPDSLAP QSSMSGYGVN VGVDLSKPMN FPVSKRTKFP SVPSSDQVLQ
0301: YDSNHADEDI QRETEAKAKR LARFKDDLSR QNARDDSSIP QKGPSTRMSQ YQSVVDRPKF SAEDIVDSSD DFSDGNLLSD YQGSESSGVI IGSCPDMCPE
0401: SERAERERKG DLDQYERLDG DRNQTSKLLA VKKYTRTAER EAVLIRPMPI LQKTMDYLLN LLEQPYGESF LRLYNFLWDR MRAIRMDLRM QHIFNREAIN
0501: MLEQMIRLHI LAMHELCEYT RGEGFSEGFD AHLNIEQMNK TSVELFQLYD DHRKRGINVE TEREFRGYYA LLKLDKHPGY KVDPAELSLD LAKMAPDMRQ
0601: TPEVLFARDV ARACRTGNFI AFFRLARRAS YLQACLMHAH FSKLRTQALA SLHSGLQNSQ GIPVNQVSKW LGMEDEDIEG LLEYYGFSLK EFEEPYMVKE
0701: GPFMEVDNDY PVKCSKLVHK KKSRTIFEDV SVPHVVSVTE KKRETLLDKD HQQKPSAFQF LKPDHSSLPI EENMHDYETV SSRKDEIEAI PITKTEFYQE
0801: TKYGSQQDPP SRAVSSLLAP PLVFFPHMSP EVQQQARVRS AEKPEVQLQA RVGSSGTPKN DEVAQFDARS MPIQFIPARD EWDSSPVLPA SSLVEDTELK
0901: HMSDEENEDE ELVITSEEAE TNEPAASYYD EEVAEAKLKL IIRKWKRRSL KKREMREEKQ LASKAALSSL SLGVPMWPNR IQHSTTVEFN IDHAVSKWYR
1001: TLEKSWSRLN VSDVVATTLY EKNAAARCLC WKVIICCEDN NINNLNPKNG VDQLNAKSWL LSKLMPARED EDDTLITSPG LSVWRNWILN ESGGDLICCL
1101: SVIKYSNFEN LNETVAGASA VLFLLSEGIP WVLQKNQLHR LLMSVPSGSQ LPLLIVSELC KENADPSTIV KELELHEVHE SRLHSFSVVY LKNQQMEQLN
1201: GFFSDEQLRG GLKWLASESP PQPVIQCVKV RELVLYHLNS LLGVLGEMNV CDVGPDNCIS AFNEALDQSM REIAAAAHAN PTCWPCPEIG LLEEHSHEHE
1301: AVTQHLPQTG WSLAPRIEPV VRAISDCKFP SFLDDTSWLH RGSDVDLKSQ ILQLQSCLTK YFTEISKLMV LPLAEKEASV MMQKFVQLQL QNSYYYIVPN
1401: WVMIFQRAFN WQLMKLAKET SFSVYILIKH DLSTSMLGAV ELEASAQPHY HLSHPSLDEM VEAGRMPLLG CAMLDGEGRA FQPYPGMTSD SEEIPTTTGA
1501: CNEIEDGKDV EYVKASYNGM EDLNEGESEP LMTIKEMKET DKLGELLDRC KIKQNMIDEN LSIYF
0001: MGTDAVEIGR SQDSKRKSRS DILPDQNMGF SRRNQSPVSG FENGNLVDGF QPLSSRTWMR SPSSAENNPV RSRSNPNQLI HQEQTGNSSF PYAHEVAEIQ
0101: EATRRKSSAV APSDKPLGDD PILSQHDSQR FSTSPPTSGT KSYTLSRSSD SQFPGQPSSV NSFNNARKTN SSPATKRTRS PPVYPIEEDI PRNSFPSQDC
0201: TEGEEQARAK RLARFKGELE PIADRPVDIQ LTKSPVNKTM KPLDNKQTFN SLESSRDALK GDALPDYENS EQPSLIIGVC PDMCPESERG ERERKGDLDH
0301: YERVDGDRNQ TSKSLAVKKY TRTAEREAIL IRPMPILQNT MEYLLSLLDR PYNENFLGMY NFLWDRMRAI RMDLRMQHIF NQEAITLLEQ MIRLHIIAMH
0401: ELCEYTKGEG FSEGFDAHLN IEQMNKTSVE LFQMYDDHRK KGITVPTEKE FRGYYALLKL DKHPGYKVEP SELSLDLANM TPEIRQTSEV LFARNVARAC
0501: RTGNFIAFFR LARKASYLQA CLMHAHFSKL RTQALASLHS GLQINQGLPV SDMSNWIGME EEDIEALLEY HGFSIKVFEE PYMVKNDLFL HADKDYKTKC
0601: SKLVHMKKSR TIVEDVSAPT VVEDVSTPFP LPSLITEATI GNQQCITAHK HEMPPARSLK KQTSMRLFDK EVADSKTSLL AEEDKPMGTF VMNPPGPFVI
0701: NPVVHQEKQN DLTSAGGFHS PVKLYSPFGS PKFPQTKSSN LEKQPNDDRI GMSPGEIKFS IIGDVYTNHV PGPALQQSPK SMPMEIMPVT TIAECPTSVE
0801: NKYALEESVP EAAMICTLEK EFNDIDEEDE DEDGVILNQY DEEVAKAKLK LIIRLWKRWS SRQSELRERR QLAAAAALNS LSLGTPIRFS KTDQSRACGE
0901: FNIDQAMRRR FEEREKSWSR LNISDVIADI LVGRNPESKC ISWKVVLCTQ TKSVNSSSSA SQVTHSAASR WLSSKLMPHA EHSSLNDDNL LFSAPGVSVW
1001: NKWVANGSDI DFTCCLSVAR DVEAENDMCE TTCGASAVLF LASGGLPLNL QREQLNLILE SVPNGSVLPL LVVISSCNGE HMEPDTDIVS GLGLHDIDKS
1101: KIASFSIVSI ANKSQKGQEV HFFNDSRLRD GFKWLASNSP LQPNLHHVKL RELFLTHFSF SLELLKQMPD QEVGPNICIS AFNDALETSR RNITSAAEAN
1201: PIGWPCPETM LLEDNRKECL MVKRYLPNLD WSSAENVELL SSVLENCKLP DFEDDLTWLT VGCASGAEIE NHTQRLEGCL IEYLTQRSNL MGVSLATKET
1301: GVMLERNTRL ELHNSSRYHI TPRWIGIFQR IFNWRIMGLF DASSSSAYVL KSDLNMSTSS YADKFLAEDA SYPSCPPNLP LLHEMIEISC SPLKSPPPYD
1401: DKAQRVVETG MLIDDHRDIE ESMLEKNREA CRGIDLMITE DDELGERSWR SKGREAAEKK TIEKRESERL DELLEKCNMV QNSIAEKLCI YF
0101: EATRRKSSAV APSDKPLGDD PILSQHDSQR FSTSPPTSGT KSYTLSRSSD SQFPGQPSSV NSFNNARKTN SSPATKRTRS PPVYPIEEDI PRNSFPSQDC
0201: TEGEEQARAK RLARFKGELE PIADRPVDIQ LTKSPVNKTM KPLDNKQTFN SLESSRDALK GDALPDYENS EQPSLIIGVC PDMCPESERG ERERKGDLDH
0301: YERVDGDRNQ TSKSLAVKKY TRTAEREAIL IRPMPILQNT MEYLLSLLDR PYNENFLGMY NFLWDRMRAI RMDLRMQHIF NQEAITLLEQ MIRLHIIAMH
0401: ELCEYTKGEG FSEGFDAHLN IEQMNKTSVE LFQMYDDHRK KGITVPTEKE FRGYYALLKL DKHPGYKVEP SELSLDLANM TPEIRQTSEV LFARNVARAC
0501: RTGNFIAFFR LARKASYLQA CLMHAHFSKL RTQALASLHS GLQINQGLPV SDMSNWIGME EEDIEALLEY HGFSIKVFEE PYMVKNDLFL HADKDYKTKC
0601: SKLVHMKKSR TIVEDVSAPT VVEDVSTPFP LPSLITEATI GNQQCITAHK HEMPPARSLK KQTSMRLFDK EVADSKTSLL AEEDKPMGTF VMNPPGPFVI
0701: NPVVHQEKQN DLTSAGGFHS PVKLYSPFGS PKFPQTKSSN LEKQPNDDRI GMSPGEIKFS IIGDVYTNHV PGPALQQSPK SMPMEIMPVT TIAECPTSVE
0801: NKYALEESVP EAAMICTLEK EFNDIDEEDE DEDGVILNQY DEEVAKAKLK LIIRLWKRWS SRQSELRERR QLAAAAALNS LSLGTPIRFS KTDQSRACGE
0901: FNIDQAMRRR FEEREKSWSR LNISDVIADI LVGRNPESKC ISWKVVLCTQ TKSVNSSSSA SQVTHSAASR WLSSKLMPHA EHSSLNDDNL LFSAPGVSVW
1001: NKWVANGSDI DFTCCLSVAR DVEAENDMCE TTCGASAVLF LASGGLPLNL QREQLNLILE SVPNGSVLPL LVVISSCNGE HMEPDTDIVS GLGLHDIDKS
1101: KIASFSIVSI ANKSQKGQEV HFFNDSRLRD GFKWLASNSP LQPNLHHVKL RELFLTHFSF SLELLKQMPD QEVGPNICIS AFNDALETSR RNITSAAEAN
1201: PIGWPCPETM LLEDNRKECL MVKRYLPNLD WSSAENVELL SSVLENCKLP DFEDDLTWLT VGCASGAEIE NHTQRLEGCL IEYLTQRSNL MGVSLATKET
1301: GVMLERNTRL ELHNSSRYHI TPRWIGIFQR IFNWRIMGLF DASSSSAYVL KSDLNMSTSS YADKFLAEDA SYPSCPPNLP LLHEMIEISC SPLKSPPPYD
1401: DKAQRVVETG MLIDDHRDIE ESMLEKNREA CRGIDLMITE DDELGERSWR SKGREAAEKK TIEKRESERL DELLEKCNMV QNSIAEKLCI YF
Arabidopsis Description
SAC3BSAC3 family protein B [Source:UniProtKB/Swiss-Prot;Acc:F4JAU2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.