Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g090810.2.1 | |
| Solyc04g026350.2.1 | |
| Solyc07g039210.2.1 | |
| Solyc12g035670.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0067g03720.t01 | Wine grape | plastid | 35.38 | 67.46 |
| KRH36229 | Soybean | nucleus | 53.59 | 50.99 |
| KRG92986 | Soybean | nucleus | 53.17 | 50.8 |
| AT2G39340.1 | Thale cress | nucleus | 47.03 | 44.93 |
| CDX93271 | Canola | nucleus | 45.99 | 44.83 |
| Os05t0462600-01 | Rice | mitochondrion | 38.5 | 44.31 |
| Bra005050.1-P | Field mustard | nucleus | 45.68 | 44.21 |
| Bra005052.1-P | Field mustard | nucleus | 45.68 | 44.21 |
| CDY07001 | Canola | nucleus | 45.16 | 44.2 |
| CDX74854 | Canola | nucleus | 45.58 | 44.11 |
| CDY44640 | Canola | nucleus | 45.99 | 43.89 |
| Bra017081.1-P | Field mustard | nucleus | 44.64 | 43.64 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.08 | 42.9 |
| TraesCS1A01G287600.8 | Wheat | nucleus | 42.46 | 42.11 |
| TraesCS1B01G297000.5 | Wheat | nucleus | 42.04 | 41.69 |
| HORVU1Hr1G071780.21 | Barley | nucleus | 41.73 | 41.55 |
| TraesCS1D01G286500.8 | Wheat | nucleus | 41.62 | 41.45 |
| VIT_13s0067g03680.t01 | Wine grape | nucleus | 16.96 | 40.95 |
| OQU87820 | Sorghum | nucleus | 39.65 | 40.66 |
| OQU78144 | Sorghum | nucleus | 42.25 | 40.6 |
| Zm00001d010546_P003 | Maize | nucleus | 42.35 | 39.36 |
| Zm00001d003061_P001 | Maize | nucleus | 4.99 | 39.02 |
| Os01t0836400-02 | Rice | nucleus | 36.52 | 38.4 |
| Zm00001d038393_P012 | Maize | nucleus | 39.75 | 37.2 |
| TraesCS3A01G354400.3 | Wheat | nucleus | 41.62 | 37.04 |
| TraesCS3D01G348300.1 | Wheat | cytosol | 41.52 | 36.04 |
| TraesCS3B01G387400.1 | Wheat | nucleus | 41.42 | 35.5 |
| HORVU3Hr1G087140.16 | Barley | nucleus, plastid | 40.69 | 33.25 |
| HORVU1Hr1G029080.1 | Barley | extracellular | 3.43 | 19.41 |
Protein Annotations
| EnsemblPlants:Solyc05g054910.2.1 | EnsemblPlantsGene:Solyc05g054910.2 | Gene3D:1.25.40.990 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:IPR000717 | InterPro:PCI_dom | InterPro:SAC3/GANP/THP3 | ncoils:Coil | PANTHER:PTHR12436 |
| PANTHER:PTHR12436:SF28 | PFAM:PF03399 | PFscan:PS50250 | SEG:seg | UniParc:UPI0002766E95 | UniProt:K4C2G8 |
| MapMan:16.11.2.1 | : | : | : | : | : |
Description
SAC3 family protein A [Source:Projected from Arabidopsis thaliana (AT2G39340) UniProtKB/Swiss-Prot;Acc:F4IUY8]
Coordinates
chr5:-:64699424..64715365
Molecular Weight (calculated)
105067.0 Da
IEP (calculated)
6.703
GRAVY (calculated)
-0.731
Length
961 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQGSATVTT LDPSSQENHQ AVDPNQHHMS SYYAPPNSTV APWSAHAADS YARENGVVSH SGYDHDQQAA PPSRNVQDGL NVAASATTPS SGATNVQQDY
101: SSYGTYQSTD PYGYNNTGYA AYYNGYQQQP NQSYPQPSGA YQNTGTSGGY TSGAYNNQTN AWHEGQYATY TSHQYPSYNS DSNAAYSSTT APAASQYQQQ
201: YKQWADYYNH TQNDVPCAPG TENISVSNVS SLSCPVPAGY PASGVQAPAS HAPPGKPESG LPALSAVQSP AVGGNVHDSY WKHWAPSFQN QQPDPVQSYG
301: QKPLDITPSH ENLQQSSSCP QGPSTQYQAS YQMPYNYQSS LPTMQQTVTP GDTGSASKLQ IPTNPRITST LTMGLPKLDI QSSTTNAAAK PAYVSVSLPK
401: TNEKVSSNAA ENALKPDTFP KSLCGYVERA LARCKDDTQM VASQAVMKEI ITKATADGTL HTRDWDTEPL FPMSSVDADK KERVIFSAPV SSSPKSKRSP
501: SRRYKSRWEP LEVEKPTVQP ASVTPDASKY GSWNKQFSGG KLDIKVNNSS HVKFSLPQRK TPKTDVFRPA KRQCVGDEMD VTDNGEASSD SDKERSQSAY
601: KSAAGAAADT PEERKRRENR SKRFERGHGS RIAANDNRSR NGGAGNVYAR RATALVLSRN IEENGNCAVE DIDWDALTVK GTCQEIEKRY LRLTSAPDPA
701: TVRPEEVLEK ALKMVQSSPK NYLYKCDQLK SIRQDLTVQR IRNELTVKVY ETHGRLAIEV GDLSEFNQCQ SQLKTLYAEG IKGCDMEFVA YNLLCVLLHS
801: SNNRDLLLAL SRLPAEARQN DAVKHALSVR AAVSTGNYVA YFRLYKTAPN LNTCLMDLYA DKMRYAAVRC MSRSNRPTVP VTYIAQVLGF TSEESEDTDG
901: VEDCVEWLKA HGACLTSDNP GEMQFDAKAS VSTLYMPEPE DAVSHGDASL AVNDFLTRNL A
101: SSYGTYQSTD PYGYNNTGYA AYYNGYQQQP NQSYPQPSGA YQNTGTSGGY TSGAYNNQTN AWHEGQYATY TSHQYPSYNS DSNAAYSSTT APAASQYQQQ
201: YKQWADYYNH TQNDVPCAPG TENISVSNVS SLSCPVPAGY PASGVQAPAS HAPPGKPESG LPALSAVQSP AVGGNVHDSY WKHWAPSFQN QQPDPVQSYG
301: QKPLDITPSH ENLQQSSSCP QGPSTQYQAS YQMPYNYQSS LPTMQQTVTP GDTGSASKLQ IPTNPRITST LTMGLPKLDI QSSTTNAAAK PAYVSVSLPK
401: TNEKVSSNAA ENALKPDTFP KSLCGYVERA LARCKDDTQM VASQAVMKEI ITKATADGTL HTRDWDTEPL FPMSSVDADK KERVIFSAPV SSSPKSKRSP
501: SRRYKSRWEP LEVEKPTVQP ASVTPDASKY GSWNKQFSGG KLDIKVNNSS HVKFSLPQRK TPKTDVFRPA KRQCVGDEMD VTDNGEASSD SDKERSQSAY
601: KSAAGAAADT PEERKRRENR SKRFERGHGS RIAANDNRSR NGGAGNVYAR RATALVLSRN IEENGNCAVE DIDWDALTVK GTCQEIEKRY LRLTSAPDPA
701: TVRPEEVLEK ALKMVQSSPK NYLYKCDQLK SIRQDLTVQR IRNELTVKVY ETHGRLAIEV GDLSEFNQCQ SQLKTLYAEG IKGCDMEFVA YNLLCVLLHS
801: SNNRDLLLAL SRLPAEARQN DAVKHALSVR AAVSTGNYVA YFRLYKTAPN LNTCLMDLYA DKMRYAAVRC MSRSNRPTVP VTYIAQVLGF TSEESEDTDG
901: VEDCVEWLKA HGACLTSDNP GEMQFDAKAS VSTLYMPEPE DAVSHGDASL AVNDFLTRNL A
0001: MNHGGNTQAV APMDPNSIEN RYGVDGSQTQ KYSYQYSTGS ESAPWTGHSV ENQAVENGNY SNSNYYHPQP TGPATGNVQE IPNTVSFTIS STSGTANVAQ
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
Arabidopsis Description
SAC3ASAC3 family protein A [Source:UniProtKB/Swiss-Prot;Acc:F4IUY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.