Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra001190.1-P | |
| Bra020761.1-P | |
| Bra040682.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39340.1 | Bra040682.1-P | AT2G19560.1 | 19843313 |
| AT2G39340.1 | Bra001190.1-P | AT3G06290.1 | 19843313 |
| AT2G39340.1 | Bra020761.1-P | AT3G06290.1 | 19843313 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07001 | Canola | nucleus | 98.07 | 98.17 |
| AT2G39340.1 | Thale cress | nucleus | 80.37 | 78.53 |
| Bra005050.1-P | Field mustard | nucleus | 78.23 | 77.44 |
| Bra005052.1-P | Field mustard | nucleus | 78.23 | 77.44 |
| VIT_13s0067g03720.t01 | Wine grape | plastid | 31.13 | 60.71 |
| KRG92986 | Soybean | nucleus | 51.07 | 49.9 |
| KRH36229 | Soybean | nucleus | 50.76 | 49.41 |
| Solyc05g054910.2.1 | Tomato | nucleus | 43.64 | 44.64 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.42 | 43.21 |
| Os05t0462600-01 | Rice | mitochondrion | 36.22 | 42.63 |
| VIT_13s0067g03680.t01 | Wine grape | nucleus | 16.99 | 41.96 |
| HORVU1Hr1G071780.21 | Barley | nucleus | 39.78 | 40.52 |
| TraesCS1D01G286500.8 | Wheat | nucleus | 39.78 | 40.52 |
| TraesCS1B01G297000.5 | Wheat | nucleus | 39.37 | 39.94 |
| OQU87820 | Sorghum | nucleus | 38.05 | 39.91 |
| TraesCS1A01G287600.8 | Wheat | nucleus | 39.06 | 39.63 |
| Os01t0836400-02 | Rice | nucleus | 36.52 | 39.28 |
| OQU78144 | Sorghum | nucleus | 38.96 | 38.3 |
| Zm00001d010546_P003 | Maize | nucleus | 39.57 | 37.62 |
| TraesCS3A01G354400.3 | Wheat | nucleus | 40.39 | 36.76 |
| Zm00001d003061_P001 | Maize | nucleus | 4.58 | 36.59 |
| TraesCS3D01G348300.1 | Wheat | cytosol | 40.28 | 35.77 |
| Zm00001d038393_P012 | Maize | nucleus | 36.83 | 35.25 |
| TraesCS3B01G387400.1 | Wheat | nucleus | 40.18 | 35.24 |
| HORVU3Hr1G087140.16 | Barley | nucleus, plastid | 39.88 | 33.33 |
| HORVU1Hr1G029080.1 | Barley | extracellular | 5.29 | 30.59 |
Protein Annotations
| EnsemblPlants:Bra017081.1 | EnsemblPlants:Bra017081.1-P | EnsemblPlantsGene:Bra017081 | Gene3D:1.25.40.990 | InterPro:IPR000717 | InterPro:PCI_dom |
| InterPro:SAC3/GANP/THP3 | PANTHER:PTHR12436 | PANTHER:PTHR12436:SF28 | PFAM:PF03399 | PFscan:PS50250 | SEG:seg |
| UniParc:UPI0002544B9F | UniProt:M4DKQ0 | MapMan:16.11.2.1 | : | : | : |
Description
AT2G39340 (E=0.0) | SAC3/GANP family protein
Coordinates
chrA04:+:16750656..16755468
Molecular Weight (calculated)
108114.0 Da
IEP (calculated)
7.257
GRAVY (calculated)
-0.782
Length
983 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQGGNTQTV APLDPNPIEQ KRYGVEGSQV QTSPYQYSTG SEAASWTNYS VDNQAVQQNG IYSNSNYYHP QPPVPATGNV HETSSSTSGT VNVAQDYSGY
101: TPYQTPSDPQ NYSNTGYTNY YSGGYQQQQP SQPYTQPVGA YQNTGAPYSS FQNPGSYAGT ASYSGTYYNP ADYQTTTGGY QSTTYNSQTA GGYVNQTPTS
201: SNQGNYPYQN YTPDAANIHS ATAATATPVH YQQSYQQWPG YYSQAEVPCA PGTEKLPPTS AFSQSFPVAG GVASEMPASN GQPAPSYAQT WRQETDSTQP
301: PSQQPAAAVS ASNNAYWMHQ TPSQQAHYPV PPQNHYQSPM ETKPLYETPI QGHQRATYPQ ELNSQASINQ APLGYRQPTQ TTPSVDTQRV SKIQIPTNPR
401: IASNLPSGYT KMDKGRSPAG ATQTPAYLSV SMSNPKGHTA AMPEPGTFPK ALCGFVERAF ARCKDDKEKA SCQAALKKII TEATNDGTIN TRDWDIEPLS
501: TVLNTDVTNT ESSSTPLSSL QNKSPTRRPK SRWEPLVESK PFVKPASTFT SGVKFGGWNH PNVNNKKSSE TFQKVDAVTG SKPTYFAQNS AKKSFQRPVK
601: RQRFTGGAID DEESSDSEKE LTPYYSSAMS LASSADEKKR RDSRSKRFEK VQGHSRGNDI PTPKISNVRR GTAMRLGEVF DKSGSRAVED MDWDALTVKG
701: TCQEIEKRYL RLTSAPDPTT VRPEDVLVKA LSMVQDSPKN YLYKCDQLKS IRQDLTVQRI HNHLTAKVYE THARFALEAG DLTEYNQCLS QLKILYAEGI
801: EGCTLEFAAY SLLYITLHSN NNRELLSSMS RLSKEAKSDE AVRHALSVRS AVTSGNYVMF FRLYKTAPNM NSCLMDLYVE KMRYKAVTFI SRSCRPSIPV
901: SYLAQVLGFA GTSSEGTGEK ENDGMEECSE WLKAHGASLI ADSNGDMVLD TKASSTSLFM PEPEDAVAHG DRYLDVNDFF TRT
101: TPYQTPSDPQ NYSNTGYTNY YSGGYQQQQP SQPYTQPVGA YQNTGAPYSS FQNPGSYAGT ASYSGTYYNP ADYQTTTGGY QSTTYNSQTA GGYVNQTPTS
201: SNQGNYPYQN YTPDAANIHS ATAATATPVH YQQSYQQWPG YYSQAEVPCA PGTEKLPPTS AFSQSFPVAG GVASEMPASN GQPAPSYAQT WRQETDSTQP
301: PSQQPAAAVS ASNNAYWMHQ TPSQQAHYPV PPQNHYQSPM ETKPLYETPI QGHQRATYPQ ELNSQASINQ APLGYRQPTQ TTPSVDTQRV SKIQIPTNPR
401: IASNLPSGYT KMDKGRSPAG ATQTPAYLSV SMSNPKGHTA AMPEPGTFPK ALCGFVERAF ARCKDDKEKA SCQAALKKII TEATNDGTIN TRDWDIEPLS
501: TVLNTDVTNT ESSSTPLSSL QNKSPTRRPK SRWEPLVESK PFVKPASTFT SGVKFGGWNH PNVNNKKSSE TFQKVDAVTG SKPTYFAQNS AKKSFQRPVK
601: RQRFTGGAID DEESSDSEKE LTPYYSSAMS LASSADEKKR RDSRSKRFEK VQGHSRGNDI PTPKISNVRR GTAMRLGEVF DKSGSRAVED MDWDALTVKG
701: TCQEIEKRYL RLTSAPDPTT VRPEDVLVKA LSMVQDSPKN YLYKCDQLKS IRQDLTVQRI HNHLTAKVYE THARFALEAG DLTEYNQCLS QLKILYAEGI
801: EGCTLEFAAY SLLYITLHSN NNRELLSSMS RLSKEAKSDE AVRHALSVRS AVTSGNYVMF FRLYKTAPNM NSCLMDLYVE KMRYKAVTFI SRSCRPSIPV
901: SYLAQVLGFA GTSSEGTGEK ENDGMEECSE WLKAHGASLI ADSNGDMVLD TKASSTSLFM PEPEDAVAHG DRYLDVNDFF TRT
0001: MNHGGNTQAV APMDPNSIEN RYGVDGSQTQ KYSYQYSTGS ESAPWTGHSV ENQAVENGNY SNSNYYHPQP TGPATGNVQE IPNTVSFTIS STSGTANVAQ
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
Arabidopsis Description
SAC3ASAC3 family protein A [Source:UniProtKB/Swiss-Prot;Acc:F4IUY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.