Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005050.1-P | |
| Bra005052.1-P | |
| Bra017081.1-P | |
| Bra040682.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G06290.1 | Bra040682.1-P | AT2G19560.1 | 19843313 |
| AT3G06290.1 | Bra005050.1-P | AT2G39340.1 | 19843313 |
| AT3G06290.1 | Bra005052.1-P | AT2G39340.1 | 19843313 |
| AT3G06290.1 | Bra017081.1-P | AT2G39340.1 | 19843313 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70818 | Canola | mitochondrion | 20.73 | 89.24 |
| Bra020761.1-P | Field mustard | cytosol | 73.54 | 73.22 |
| AT3G06290.1 | Thale cress | plastid | 68.17 | 65.88 |
| CDY08059 | Canola | cytosol, plastid | 37.74 | 64.28 |
| VIT_05s0020g02350.t01 | Wine grape | nucleus | 37.38 | 40.46 |
| KRH20952 | Soybean | nucleus | 36.28 | 39.43 |
| KRH11322 | Soybean | nucleus | 36.59 | 38.56 |
| GSMUA_Achr5P27420_001 | Banana | cytosol | 29.27 | 38.46 |
| Solyc12g035670.1.1 | Tomato | nucleus | 35.3 | 37.0 |
| Bra003181.1-P | Field mustard | mitochondrion, plastid | 7.32 | 31.17 |
| HORVU2Hr1G025040.2 | Barley | plastid | 20.24 | 31.06 |
| TraesCS2D01G144800.1 | Wheat | plastid | 30.79 | 30.59 |
| Zm00001d022343_P001 | Maize | plastid | 32.2 | 29.12 |
| TraesCS2A01G141300.1 | Wheat | cytosol | 31.1 | 28.81 |
| OQU90370 | Sorghum | plastid | 30.98 | 28.72 |
| TraesCS2B01G166300.1 | Wheat | cytosol | 30.98 | 28.38 |
| Zm00001d022344_P001 | Maize | cytosol | 20.18 | 27.22 |
| Zm00001d022346_P001 | Maize | cytosol | 28.11 | 16.82 |
Protein Annotations
| EnsemblPlants:Bra001190.1 | EnsemblPlants:Bra001190.1-P | EnsemblPlantsGene:Bra001190 | Gene3D:1.25.40.990 | InterPro:IPR000717 | InterPro:PCI_dom |
| InterPro:SAC3/GANP/THP3 | ncoils:Coil | PANTHER:PTHR12436 | PANTHER:PTHR12436:SF17 | PFAM:PF03399 | PFscan:PS50250 |
| SEG:seg | UniParc:UPI0002540AAF | UniProt:M4CAG1 | MapMan:16.11.2.1 | : | : |
Description
AT3G06290 (E=0.0) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP family protein (TAIR:AT3G54380.1); Has 1341 Blast hits to 841 proteins in 168 species: Archae - 0; Bacteria - 24; Metazoa - 448; Fungi - 228; Plants - 85; Viruses - 0; Other Eukaryotes - 556 (source: NCBI BLink).
Coordinates
chrA03:-:15219336..15227200
Molecular Weight (calculated)
183539.0 Da
IEP (calculated)
6.874
GRAVY (calculated)
-0.608
Length
1640 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAFKPFGKDV GPAMSSKPSP FTTFGASSAP AQTTSDSPIQ PPASQNHSGY AGQSFGPRGT QSGASVQRAP SPSGFQNPPP FIGQPYRPGG VQSSLPMNRT
0101: PSPLAFQNPS LSSGQPYRPG GTQRSPGPVN GIQWGSEAFP RPSPSVRPYQ FPGVQRPTLN PQFGHDESRN LLKDQGKHSL ATSAASISHT LSRSGPDAVE
0201: IGRSQDSKRK SQSDLPGRSL GFPRINHSPV SDFENGSLVD DVQQPSSHTW IRSPSADNNP VRSRSNPNRL IQQEQTPSSS FPYAHESVEI QEATKRRLST
0301: SPPASGAKSF MLSRSSDSQF PVQPSSLNNF NSAGKANSSP ATKRTRSPTS YPVEEDIQGN SFPSRDCTEG EEQARAKRLA RFKGELDPVP ARPVDTQLTK
0401: SSVNKTVKPL DNKQTFNSLE SSRDALPEYE SSEQPSLIVG LCPDMCPESE RGERERKGDL DHYERVDGDR NQTSKFLAVK KYTRTAEREA ILIRPMPILQ
0501: NTMEYLLSLL DRPYNENFLG MYNFLWDRMR AIRMDLRMQH IFNREAITLL EQMIRLHILA MHELCEYTKG EGFSEGFDAH LNIEQMNKTS VELFQMYDDH
0601: RKRGITVPTE KEFRGYYALL KLDKHPGYKV EPSELSLDLA NMTPEIRQTS EVLFARNVAR ACRTGNFIAF FRLARKASYL QACLMHAHFS KLRTQALASL
0701: HSGLQNNQGI PVSDTSNWIG MEEEDIEALL EYHGFSIKVF EEPYMVKDGL FLHADTDYKT KCSKLVHMKK SRTIVEDVSA PSTKENVSAP SPLSSLPTEA
0801: NKGHKPLITT YKQERPPAQS PKKQTSVRPV DKEMTDSKTS LLLEEDKPVR TSVINPVWPP VINPAVDQQK QNDLTPAGGF HSPLKFSSPF GSPGFPQAVS
0901: SNLKKQPNDG HTSSSPAKIK FPFVAHMQMN LVPEPTLQQS PKSTPMESLP VTTISESPTI VENISALEES VPEAAMTGTM EEGLHDIEQE DEDGTEDITN
1001: QYDEEVAKAK LKLMIRLWKR WSSRQSQLRE RRQLAATAAL SSLSLGTPIR FSKPDQSRPC GEFDIDQAMK RRFEEREKSW SRLNISDVIA DTLLERNPDS
1101: KCICWKVILC TQAKSVNTSS QDTHSAASRW LLSKLIPHTE HTVPDENLLF SAPGVSVWNK WIESGCCLSV ARDVEADKAL CEATRGASAV LFLASKDLPL
1201: NHQREQLNRI LQSVPNDSLL PLLVIISSSN RESVDPDTNL VSELGLHDIN KSKIASFTIV SIANKSQKGH EVRFFSDSRL RDGLKWLAGN SPLQANLHHV
1301: KPRELVLTHL SFSLELLKKM PDQELGPNIC ISAFNDALET SKRNVASAAE ANPIGWPCPE TMLLEDNRKE HLMLKQYLPN LDWSSAESIK PLNSMLENCK
1401: LPCLEDDLKW LTKKCASGDE IENHTQRLEG CLVEYLTQTS NLMGVSLAAK EAGVMVQRNT RLELRSSSYY HIIPRWIGIF QRIFNWRIMG LLDSSSSSAY
1501: VLKSDLTMSA SSYADKFLSE EEAAYQSPRP NLPLLREMIQ ISCSPFKASQ VQTERVIDDH RDIDETMLEK SREASRRIDV MMITEDDELA DETERTLRDK
1601: EREAAEKKMM KDRESERLDE LLEKCNLVQN SIAEKLCIYF
0101: PSPLAFQNPS LSSGQPYRPG GTQRSPGPVN GIQWGSEAFP RPSPSVRPYQ FPGVQRPTLN PQFGHDESRN LLKDQGKHSL ATSAASISHT LSRSGPDAVE
0201: IGRSQDSKRK SQSDLPGRSL GFPRINHSPV SDFENGSLVD DVQQPSSHTW IRSPSADNNP VRSRSNPNRL IQQEQTPSSS FPYAHESVEI QEATKRRLST
0301: SPPASGAKSF MLSRSSDSQF PVQPSSLNNF NSAGKANSSP ATKRTRSPTS YPVEEDIQGN SFPSRDCTEG EEQARAKRLA RFKGELDPVP ARPVDTQLTK
0401: SSVNKTVKPL DNKQTFNSLE SSRDALPEYE SSEQPSLIVG LCPDMCPESE RGERERKGDL DHYERVDGDR NQTSKFLAVK KYTRTAEREA ILIRPMPILQ
0501: NTMEYLLSLL DRPYNENFLG MYNFLWDRMR AIRMDLRMQH IFNREAITLL EQMIRLHILA MHELCEYTKG EGFSEGFDAH LNIEQMNKTS VELFQMYDDH
0601: RKRGITVPTE KEFRGYYALL KLDKHPGYKV EPSELSLDLA NMTPEIRQTS EVLFARNVAR ACRTGNFIAF FRLARKASYL QACLMHAHFS KLRTQALASL
0701: HSGLQNNQGI PVSDTSNWIG MEEEDIEALL EYHGFSIKVF EEPYMVKDGL FLHADTDYKT KCSKLVHMKK SRTIVEDVSA PSTKENVSAP SPLSSLPTEA
0801: NKGHKPLITT YKQERPPAQS PKKQTSVRPV DKEMTDSKTS LLLEEDKPVR TSVINPVWPP VINPAVDQQK QNDLTPAGGF HSPLKFSSPF GSPGFPQAVS
0901: SNLKKQPNDG HTSSSPAKIK FPFVAHMQMN LVPEPTLQQS PKSTPMESLP VTTISESPTI VENISALEES VPEAAMTGTM EEGLHDIEQE DEDGTEDITN
1001: QYDEEVAKAK LKLMIRLWKR WSSRQSQLRE RRQLAATAAL SSLSLGTPIR FSKPDQSRPC GEFDIDQAMK RRFEEREKSW SRLNISDVIA DTLLERNPDS
1101: KCICWKVILC TQAKSVNTSS QDTHSAASRW LLSKLIPHTE HTVPDENLLF SAPGVSVWNK WIESGCCLSV ARDVEADKAL CEATRGASAV LFLASKDLPL
1201: NHQREQLNRI LQSVPNDSLL PLLVIISSSN RESVDPDTNL VSELGLHDIN KSKIASFTIV SIANKSQKGH EVRFFSDSRL RDGLKWLAGN SPLQANLHHV
1301: KPRELVLTHL SFSLELLKKM PDQELGPNIC ISAFNDALET SKRNVASAAE ANPIGWPCPE TMLLEDNRKE HLMLKQYLPN LDWSSAESIK PLNSMLENCK
1401: LPCLEDDLKW LTKKCASGDE IENHTQRLEG CLVEYLTQTS NLMGVSLAAK EAGVMVQRNT RLELRSSSYY HIIPRWIGIF QRIFNWRIMG LLDSSSSSAY
1501: VLKSDLTMSA SSYADKFLSE EEAAYQSPRP NLPLLREMIQ ISCSPFKASQ VQTERVIDDH RDIDETMLEK SREASRRIDV MMITEDDELA DETERTLRDK
1601: EREAAEKKMM KDRESERLDE LLEKCNLVQN SIAEKLCIYF
0001: MAFRPFGKDL GPMSSKPAPF TPFGASSTTS DSSIQPPASQ NHSAFAGQSF GPGGIRSGPS IQRAPPLSAS QNPQLSIGKP YRPGGVQSVP PINRIPSPSA
0101: FQNPSPSSGQ PYQPGGIQRI PEPFNGIAWG PEASRTSPSV RPYQFPGVQR PNLNPQYGHD GSRNFLKDHG EHSRATSPPA TSHILSRMGT DAVEIGRSQD
0201: SKRKSRSDIL PDQNMGFSRR NQSPVSGFEN GNLVDGFQPL SSRTWMRSPS SAENNPVRSR SNPNQLIHQE QTGNSSFPYA HEVAEIQEAT RRKSSAVAPS
0301: DKPLGDDPIL SQHDSQRFST SPPTSGTKSY TLSRSSDSQF PGQPSSVNSF NNARKTNSSP ATKRTRSPPV YPIEEDIPRN SFPSQDCTEG EEQARAKRLA
0401: RFKGELEPIA DRPVDIQLTK SPVNKTMKPL DNKQTFNSLE SSRDALKGDA LPDYENSEQP SLIIGVCPDM CPESERGERE RKGDLDHYER VDGDRNQTSK
0501: SLAVKKYTRT AEREAILIRP MPILQNTMEY LLSLLDRPYN ENFLGMYNFL WDRMRAIRMD LRMQHIFNQE AITLLEQMIR LHIIAMHELC EYTKGEGFSE
0601: GFDAHLNIEQ MNKTSVELFQ MYDDHRKKGI TVPTEKEFRG YYALLKLDKH PGYKVEPSEL SLDLANMTPE IRQTSEVLFA RNVARACRTG NFIAFFRLAR
0701: KASYLQACLM HAHFSKLRTQ ALASLHSGLQ INQGLPVSDM SNWIGMEEED IEALLEYHGF SIKVFEEPYM VKNDLFLHAD KDYKTKCSKL VHMKKSRTIV
0801: EDVSAPTVVE DVSTPFPLPS LITEATIGNQ QCITAHKHEM PPARSLKKQT SMRLFDKEVA DSKTSLLAEE DKPMGTFVMN PPGPFVINPV VHQEKQNDLT
0901: SAGGFHSPVK LYSPFGSPKF PQTKSSNLEK QPNDDRIGMS PGEIKFSIIG DVYTNHVPGP ALQQSPKSMP MEIMPVTTIA ECPTSVENKY ALEESVPEAA
1001: MICTLEKEFN DIDEEDEDED GVILNQYDEE VAKAKLKLII RLWKRWSSRQ SELRERRQLA AAAALNSLSL GTPIRFSKTD QSRACGEFNI DQAMRRRFEE
1101: REKSWSRLNI SDVIADILVG RNPESKCISW KVVLCTQTKS VNSSSSASQV THSAASRWLS SKLMPHAEHS SLNDDNLLFS APGVSVWNKW VANGSDIDFT
1201: CCLSVARDVE AENDMCETTC GASAVLFLAS GGLPLNLQRE QLNLILESVP NGSVLPLLVV ISSCNGEHME PDTDIVSGLG LHDIDKSKIA SFSIVSIANK
1301: SQKGQEVHFF NDSRLRDGFK WLASNSPLQP NLHHVKLREL FLTHFSFSLE LLKQMPDQEV GPNICISAFN DALETSRRNI TSAAEANPIG WPCPETMLLE
1401: DNRKECLMVK RYLPNLDWSS AENVELLSSV LENCKLPDFE DDLTWLTVGC ASGAEIENHT QRLEGCLIEY LTQRSNLMGV SLATKETGVM LERNTRLELH
1501: NSSRYHITPR WIGIFQRIFN WRIMGLFDAS SSSAYVLKSD LNMSTSSYAD KFLAEDASYP SCPPNLPLLH EMIEISCSPL KSPPPYDDKA QRVVETGMLI
1601: DDHRDIEESM LEKNREACRG IDLMITEDDE LGERSWRSKG REAAEKKTIE KRESERLDEL LEKCNMVQNS IAEKLCIYF
0101: FQNPSPSSGQ PYQPGGIQRI PEPFNGIAWG PEASRTSPSV RPYQFPGVQR PNLNPQYGHD GSRNFLKDHG EHSRATSPPA TSHILSRMGT DAVEIGRSQD
0201: SKRKSRSDIL PDQNMGFSRR NQSPVSGFEN GNLVDGFQPL SSRTWMRSPS SAENNPVRSR SNPNQLIHQE QTGNSSFPYA HEVAEIQEAT RRKSSAVAPS
0301: DKPLGDDPIL SQHDSQRFST SPPTSGTKSY TLSRSSDSQF PGQPSSVNSF NNARKTNSSP ATKRTRSPPV YPIEEDIPRN SFPSQDCTEG EEQARAKRLA
0401: RFKGELEPIA DRPVDIQLTK SPVNKTMKPL DNKQTFNSLE SSRDALKGDA LPDYENSEQP SLIIGVCPDM CPESERGERE RKGDLDHYER VDGDRNQTSK
0501: SLAVKKYTRT AEREAILIRP MPILQNTMEY LLSLLDRPYN ENFLGMYNFL WDRMRAIRMD LRMQHIFNQE AITLLEQMIR LHIIAMHELC EYTKGEGFSE
0601: GFDAHLNIEQ MNKTSVELFQ MYDDHRKKGI TVPTEKEFRG YYALLKLDKH PGYKVEPSEL SLDLANMTPE IRQTSEVLFA RNVARACRTG NFIAFFRLAR
0701: KASYLQACLM HAHFSKLRTQ ALASLHSGLQ INQGLPVSDM SNWIGMEEED IEALLEYHGF SIKVFEEPYM VKNDLFLHAD KDYKTKCSKL VHMKKSRTIV
0801: EDVSAPTVVE DVSTPFPLPS LITEATIGNQ QCITAHKHEM PPARSLKKQT SMRLFDKEVA DSKTSLLAEE DKPMGTFVMN PPGPFVINPV VHQEKQNDLT
0901: SAGGFHSPVK LYSPFGSPKF PQTKSSNLEK QPNDDRIGMS PGEIKFSIIG DVYTNHVPGP ALQQSPKSMP MEIMPVTTIA ECPTSVENKY ALEESVPEAA
1001: MICTLEKEFN DIDEEDEDED GVILNQYDEE VAKAKLKLII RLWKRWSSRQ SELRERRQLA AAAALNSLSL GTPIRFSKTD QSRACGEFNI DQAMRRRFEE
1101: REKSWSRLNI SDVIADILVG RNPESKCISW KVVLCTQTKS VNSSSSASQV THSAASRWLS SKLMPHAEHS SLNDDNLLFS APGVSVWNKW VANGSDIDFT
1201: CCLSVARDVE AENDMCETTC GASAVLFLAS GGLPLNLQRE QLNLILESVP NGSVLPLLVV ISSCNGEHME PDTDIVSGLG LHDIDKSKIA SFSIVSIANK
1301: SQKGQEVHFF NDSRLRDGFK WLASNSPLQP NLHHVKLREL FLTHFSFSLE LLKQMPDQEV GPNICISAFN DALETSRRNI TSAAEANPIG WPCPETMLLE
1401: DNRKECLMVK RYLPNLDWSS AENVELLSSV LENCKLPDFE DDLTWLTVGC ASGAEIENHT QRLEGCLIEY LTQRSNLMGV SLATKETGVM LERNTRLELH
1501: NSSRYHITPR WIGIFQRIFN WRIMGLFDAS SSSAYVLKSD LNMSTSSYAD KFLAEDASYP SCPPNLPLLH EMIEISCSPL KSPPPYDDKA QRVVETGMLI
1601: DDHRDIEESM LEKNREACRG IDLMITEDDE LGERSWRSKG REAAEKKTIE KRESERLDEL LEKCNMVQNS IAEKLCIYF
Arabidopsis Description
SAC3BSAC3 family protein B [Source:UniProtKB/Swiss-Prot;Acc:F4JAU2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.