Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39340.1 | EER98853 | AT2G19560.1 | 19843313 |
| AT2G39340.1 | OQU90370 | AT3G06290.1 | 19843313 |
| AT2G39340.1 | KXG36700 | AT3G50360.1 | 19843313 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0836400-02 | Rice | nucleus | 56.88 | 58.32 |
| TraesCS3A01G354400.3 | Wheat | nucleus | 66.06 | 57.31 |
| VIT_13s0067g03720.t01 | Wine grape | plastid | 29.99 | 55.75 |
| TraesCS3D01G348300.1 | Wheat | cytosol | 65.74 | 55.65 |
| TraesCS3B01G387400.1 | Wheat | nucleus | 65.21 | 54.5 |
| OQU78144 | Sorghum | nucleus | 55.92 | 52.4 |
| HORVU3Hr1G087140.16 | Barley | nucleus, plastid | 63.07 | 50.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.35 | 46.94 |
| KRG92986 | Soybean | nucleus | 42.69 | 39.76 |
| Solyc05g054910.2.1 | Tomato | nucleus | 40.66 | 39.65 |
| KRH36229 | Soybean | nucleus | 42.69 | 39.6 |
| CDX93271 | Canola | nucleus | 40.45 | 38.44 |
| AT2G39340.1 | Thale cress | nucleus | 41.09 | 38.27 |
| CDY07001 | Canola | nucleus | 39.91 | 38.09 |
| CDX74854 | Canola | nucleus | 40.34 | 38.07 |
| Bra017081.1-P | Field mustard | nucleus | 39.91 | 38.05 |
| Bra005052.1-P | Field mustard | nucleus | 40.23 | 37.97 |
| Bra005050.1-P | Field mustard | nucleus | 40.23 | 37.97 |
| CDY44640 | Canola | nucleus | 40.66 | 37.84 |
| VIT_13s0067g03680.t01 | Wine grape | nucleus | 13.02 | 30.65 |
Protein Annotations
| EnsemblPlants:OQU87820 | EnsemblPlantsGene:SORBI_3003G348000 | Gene3D:1.25.40.990 | InterPro:IPR000717 | InterPro:PCI_dom | InterPro:SAC3/GANP/THP3 |
| PANTHER:PTHR12436 | PANTHER:PTHR12436:SF28 | PFAM:PF03399 | PFscan:PS50250 | ProteinID:OQU87820 | ProteinID:OQU87820.1 |
| ProteinID:OQU87821.1 | ProteinID:OQU87822.1 | SEG:seg | UniParc:UPI0009DC8445 | UniProt:A0A1W0W0A9 | MapMan:16.11.2.1 |
Description
hypothetical protein
Coordinates
chr3:+:66844827..66854731
Molecular Weight (calculated)
103512.0 Da
IEP (calculated)
6.932
GRAVY (calculated)
-0.620
Length
937 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNINQNSVY YDPQRDVSVS GATQSVTNSE SHVVQSANSY VPYLASVQQD YNAIQHPNHY YSYPQAANDS SVQRGVDQGP GAAYQPLTLF PSSGSYVGPT
101: SNTYCTAGAH QTLPGYATSN YYYHQNNAWG NGSCVNNHAQ SYQSCTPDSN AAQSCSLPTS SVHYQQQYSQ WGYYYDQSAQ TSGGLALTSS GSIAPDTKTV
201: TIGSNYVHSS NQPPPPGTTS WKSDAGNTTT PPSQEQGIQG YQNQYASQVP VALMFHTHYV NNAAGIPTFQ NQCVSLAYQH SSANHNQLPL SNQVDQQKVL
301: PLHGSSSNVS SVNHVCENPE TPQDSLSSNV HMLNKIQIST NPRIAPDFPI GTPQVDKSKS EADSSLKPAY VCVPMPKNDV TVSQNGSEAV MQVTGSFPVS
401: LRTYVERNLA RCKDDAQRTA SRCILKEIIA KATADGTLHT KNWDIEPLFT LPEKATSMNM TSNGKDSSPF SSSRSPSRRT KSRWEPVAKS RWEPVAEENV
501: ANNVEISNEL AKINVCSSFE PTKRTSNNWD LRKHVQCQAP LSQFSHRPTK MQRTGGDASL TENGNALSDA DKEQDLMKYY TSSIAQANSP EEKKRREHRS
601: KRFEQSQGTP SKSRSSIPDK VATDNIYTSR AMSLLLNRSN GDSAGLAVED FDWDALTIKG TCQQIEKQYL RLTSAPDPTT VRPEDVLEKA LCMVETSEKN
701: YLYKCDQLKS IRQDFTVQRI QNELSVKVYE THARLAIESG DLAEYNQCQS QLKRLYGEGV KGCNLEFSAY NLLYLVHSNN KRDLLSSMAS LPKEAKKDTA
801: VKHALQVRYA FLSANYVLFF KLYKMAPNLN SCLMDLYVEQ MRFAAIKCMS KSYRPTVPVR YAARVLGFVG VDKVCEALEE CEEWLKAHGA ILSVDNNGEL
901: QIDTKVSSTS LYLPEPENAV SHGDASLAVD DFLTRAS
101: SNTYCTAGAH QTLPGYATSN YYYHQNNAWG NGSCVNNHAQ SYQSCTPDSN AAQSCSLPTS SVHYQQQYSQ WGYYYDQSAQ TSGGLALTSS GSIAPDTKTV
201: TIGSNYVHSS NQPPPPGTTS WKSDAGNTTT PPSQEQGIQG YQNQYASQVP VALMFHTHYV NNAAGIPTFQ NQCVSLAYQH SSANHNQLPL SNQVDQQKVL
301: PLHGSSSNVS SVNHVCENPE TPQDSLSSNV HMLNKIQIST NPRIAPDFPI GTPQVDKSKS EADSSLKPAY VCVPMPKNDV TVSQNGSEAV MQVTGSFPVS
401: LRTYVERNLA RCKDDAQRTA SRCILKEIIA KATADGTLHT KNWDIEPLFT LPEKATSMNM TSNGKDSSPF SSSRSPSRRT KSRWEPVAKS RWEPVAEENV
501: ANNVEISNEL AKINVCSSFE PTKRTSNNWD LRKHVQCQAP LSQFSHRPTK MQRTGGDASL TENGNALSDA DKEQDLMKYY TSSIAQANSP EEKKRREHRS
601: KRFEQSQGTP SKSRSSIPDK VATDNIYTSR AMSLLLNRSN GDSAGLAVED FDWDALTIKG TCQQIEKQYL RLTSAPDPTT VRPEDVLEKA LCMVETSEKN
701: YLYKCDQLKS IRQDFTVQRI QNELSVKVYE THARLAIESG DLAEYNQCQS QLKRLYGEGV KGCNLEFSAY NLLYLVHSNN KRDLLSSMAS LPKEAKKDTA
801: VKHALQVRYA FLSANYVLFF KLYKMAPNLN SCLMDLYVEQ MRFAAIKCMS KSYRPTVPVR YAARVLGFVG VDKVCEALEE CEEWLKAHGA ILSVDNNGEL
901: QIDTKVSSTS LYLPEPENAV SHGDASLAVD DFLTRAS
0001: MNHGGNTQAV APMDPNSIEN RYGVDGSQTQ KYSYQYSTGS ESAPWTGHSV ENQAVENGNY SNSNYYHPQP TGPATGNVQE IPNTVSFTIS STSGTANVAQ
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
Arabidopsis Description
SAC3ASAC3 family protein A [Source:UniProtKB/Swiss-Prot;Acc:F4IUY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.