CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78144
OQU87820
OQU90370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50360.1	OQU78144	AT2G39340.1	19843313
AT3G50360.1	OQU87820	AT2G39340.1	19843313
AT3G50360.1	OQU90370	AT3G06290.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022160_P003	Maize	cytosol, mitochondrion	88.37	88.37
HORVU2Hr1G030640.1	Barley	cytosol	79.65	81.07
TraesCS2D01G173900.1	Wheat	cytosol, mitochondrion	79.07	80.95
TraesCS2B01G192400.1	Wheat	cytosol, mitochondrion	79.07	80.95
TraesCS2A01G166500.1	Wheat	cytosol, mitochondrion	79.07	80.95
KRH10567	Soybean	endoplasmic reticulum	67.44	68.24
AT3G50360.1	Thale cress	cytosol	65.7	66.86
Solyc04g026350.2.1	Tomato	cytosol	66.28	65.9
Solyc02g090810.2.1	Tomato	cytosol, mitochondrion	63.95	65.48
PGSC0003DMT400010295	Potato	cytosol, mitochondrion	63.95	65.48
Os07t0618800-01	Rice	plasma membrane	79.07	65.07
VIT_05s0094g01240.t01	Wine grape	cytosol	62.21	64.85
GSMUA_Achr6P10140_001	Banana	cytosol	59.88	63.19
KRG98823	Soybean	cytosol	55.23	60.51
KRG98826	Soybean	cytosol	55.23	60.51
KRH43884	Soybean	cytosol	45.93	60.31
CDX83123	Canola	golgi	66.86	60.21
CDY62753	Canola	cytosol	67.44	58.0
CDX75623	Canola	extracellular	56.4	53.89
AT4G37010.2	Thale cress	cytosol, mitochondrion	53.49	53.8
VIT_07s0031g00700.t01	Wine grape	cytosol	62.21	52.97
KXG37587	Sorghum	cytosol	29.65	33.12
EER90981	Sorghum	cytosol	28.49	32.89
EES09201	Sorghum	cytosol	34.3	32.78
EES16322	Sorghum	cytosol	31.98	31.25
EES01631	Sorghum	cytosol	33.14	30.98
OQU79799	Sorghum	cytosol	25.0	29.05
OQU78227	Sorghum	cytosol	28.49	27.37
EES19997	Sorghum	plastid	26.16	24.19
EES03239	Sorghum	plastid	26.16	19.07
OQU84270	Sorghum	cytosol, plastid	22.67	17.81
KXG37588	Sorghum	mitochondrion, nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.238.10	MapMan:14.6.1.1	MapMan:16.11.2.3	UniProt:A0A1B6QFM7	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	EnsemblPlants:KXG36700
ProteinID:KXG36700	ProteinID:KXG36700.1	PFAM:PF13499	PFAM:PF13833	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR23050	PANTHER:PTHR23050:SF167	SMART:SM00054	EnsemblPlantsGene:SORBI_3002G376500	SUPFAM:SSF47473	UniParc:UPI0002207139

Description

hypothetical protein

Coordinates

chr2:+:73371420..73373976

Molecular Weight (calculated)

19534.1 Da

IEP (calculated)

4.731

GRAVY (calculated)

-0.663

Length

172 amino acids

Sequence
(BLAST)

001: MSFNQSTVKG QTRRERPRAR PHGLTQQKRQ EIKEAFDLFD TDNSGTIDAK ELNVAMRALG FEMTEEQIRQ MIADVDKDGS GAIDYEEFEH MMTAKIGERD
101: SKEELTKAFR IIDQDGNGKI SNIDIQRIAK ELGVNLTLDE IQDMVQEADR NGLLCSVIFI SFCKLQRPST SS

Best Arabidopsis Sequence Match ( AT3G50360.1 )
(BLAST)

001: MSSIYRTVSR KEKPRRHHGL TTQKKQEIKE AFELFDTDGS GTIDAKELNV AMRALGFEMT EEQINKMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKEE
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN

Arabidopsis Description

CML20Probable calcium-binding protein CML20 [Source:UniProtKB/Swiss-Prot;Acc:O82659]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.