CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30413	Soybean	cytosol	55.71	76.73
VIT_02s0012g02060.t01	Wine grape	cytosol	56.62	76.07
KRH25249	Soybean	cytosol	56.62	76.07
TraesCS1B01G208700.1	Wheat	cytosol	65.75	75.39
TraesCS1D01G197600.1	Wheat	cytosol	65.75	74.23
TraesCS1A01G193700.1	Wheat	cytosol	65.3	74.09
Os01t0505600-01	Rice	cytosol	71.23	73.93
VIT_16s0039g01880.t01	Wine grape	cytosol	54.79	73.62
Solyc03g097100.1.1	Tomato	cytosol	54.79	73.62
PGSC0003DMT400038352	Potato	cytosol	54.79	73.62
Bra040770.1-P	Field mustard	cytosol	53.88	71.08
CDY54677	Canola	cytosol	53.88	71.08
CDY61824	Canola	cytosol	53.88	71.08
AT1G32250.1	Thale cress	cytosol	53.42	70.48
HORVU1Hr1G080000.3	Barley	cytosol	59.36	69.52
HORVU1Hr1G050720.2	Barley	cytosol	57.53	48.28
EES19997	Sorghum	plastid	38.36	45.16
EER90981	Sorghum	cytosol	26.94	39.6
KXG37587	Sorghum	cytosol	26.48	37.66
EES16322	Sorghum	cytosol	29.22	36.36
EES03239	Sorghum	plastid	37.9	35.17
EES01631	Sorghum	cytosol	29.22	34.78
EES09201	Sorghum	cytosol	27.85	33.89
OQU79799	Sorghum	cytosol	22.37	33.11
OQU78227	Sorghum	cytosol	20.09	24.58
KXG36700	Sorghum	cytosol	17.81	22.67
KXG37588	Sorghum	mitochondrion, nucleus	0.46	0.73

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	UniProt:A0A1Z5RKJ4	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0000325	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0008150	GO:GO:0043269
InterPro:IPR002048	EnsemblPlants:OQU84270	ProteinID:OQU84270	ProteinID:OQU84270.1	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR44256	PANTHER:PTHR44256:SF1	SMART:SM00054	EnsemblPlantsGene:SORBI_3004G024000	SUPFAM:SSF47473
UniParc:UPI000B8BA4D6	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:1949532..1950349

Molecular Weight (calculated)

23446.2 Da

IEP (calculated)

4.306

GRAVY (calculated)

-0.289

Length

219 amino acids

Sequence
(BLAST)

001: MGDLNMSDAT TAPTADAAAH SKQAPSSAPS SLETTMASIR RGGGSSVAAT MSQQASQQQQ QPSRLDDDQL AELREIFRSF DRNADGSLTQ LELGSLLRSL
101: GLTPSADQLD ALITRADTNS NGLVEFSEFV ALVAPDLLAD RSPYSEDQLR KLFAIFDRDG NGFITAAELA HSMARLGHAL TVKELTGMIK EADTDGDGRI
201: NFQEFSRAIT AAAFDNILY

Best Arabidopsis Sequence Match ( AT1G32250.1 )
(BLAST)

001: MSHKVSKKLD EEQINELREI FRSFDRNKDG SLTQLELGSL LRALGVKPSP DQFETLIDKA DTKSNGLVEF PEFVALVSPE LLSPAKRTTP YTEEQLLRLF
101: RIFDTDGNGF ITAAELAHSM AKLGHALTVA ELTGMIKEAD SDGDGRINFQ EFAKAINSAA FDDIWG

Arabidopsis Description

CML17Probable calcium-binding protein CML17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQN4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.