Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54677 | Canola | cytosol | 93.98 | 93.98 |
| CDY61824 | Canola | cytosol | 93.37 | 93.37 |
| Bra040770.1-P | Field mustard | cytosol | 93.37 | 93.37 |
| Solyc03g097100.1.1 | Tomato | cytosol | 71.69 | 73.01 |
| AT3G03000.1 | Thale cress | cytosol | 70.48 | 70.91 |
| TraesCS1B01G208700.1 | Wheat | cytosol | 70.48 | 61.26 |
| TraesCS1A01G193700.1 | Wheat | cytosol | 70.48 | 60.62 |
| TraesCS1D01G197600.1 | Wheat | cytosol | 70.48 | 60.31 |
| Os01t0505600-01 | Rice | cytosol | 70.48 | 55.45 |
| HORVU1Hr1G080000.3 | Barley | cytosol | 61.45 | 54.55 |
| OQU84270 | Sorghum | cytosol, plastid | 70.48 | 53.42 |
| AT1G18530.1 | Thale cress | cytosol | 48.19 | 50.96 |
| AT3G25600.1 | Thale cress | cytosol | 47.59 | 49.07 |
| AT3G56800.1 | Thale cress | cytosol | 40.36 | 44.97 |
| AT5G21274.1 | Thale cress | cytosol | 39.16 | 43.62 |
| AT1G66410.2 | Thale cress | cytosol | 40.36 | 42.14 |
| AT2G41110.2 | Thale cress | cytosol | 40.36 | 41.61 |
| AT4G14640.1 | Thale cress | cytosol | 37.35 | 41.06 |
| HORVU1Hr1G050720.2 | Barley | cytosol | 64.46 | 41.0 |
| AT5G37780.3 | Thale cress | cytosol | 40.36 | 38.29 |
| AT2G27030.3 | Thale cress | cytosol | 40.36 | 37.02 |
| AT3G22930.1 | Thale cress | cytosol | 36.14 | 34.68 |
| AT1G62820.1 | Thale cress | cytosol | 27.71 | 31.08 |
| AT3G43810.2 | Thale cress | cytosol | 39.76 | 30.84 |
| AT1G12310.1 | Thale cress | cytosol | 27.11 | 30.41 |
| AT2G41090.1 | Thale cress | cytosol | 33.73 | 29.32 |
| AT3G50360.1 | Thale cress | cytosol | 29.52 | 28.99 |
| AT4G37010.2 | Thale cress | cytosol, mitochondrion | 27.71 | 26.9 |
| AT2G41100.1 | Thale cress | cytosol | 36.75 | 18.83 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | EntrezGene:840117 | UniProt:A0A178WHY6 | ProteinID:AAF81321.1 | ProteinID:AAG60177.1 |
| ProteinID:AEE31456.1 | ArrayExpress:AT1G32250 | EnsemblPlantsGene:AT1G32250 | RefSeq:AT1G32250 | TAIR:AT1G32250 | RefSeq:AT1G32250-TAIR-G |
| EnsemblPlants:AT1G32250.1 | TAIR:AT1G32250.1 | EMBL:DQ056474 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0046872 |
| InterPro:IPR002048 | RefSeq:NP_174504.1 | ProteinID:OAP17083.1 | PFAM:PF13499 | PO:PO:0000056 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | ScanProsite:PS00018 | PFscan:PS50222 |
| PANTHER:PTHR44256 | PANTHER:PTHR44256:SF2 | UniProt:Q9LQN4 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI00000A8E80 |
Description
CML17Probable calcium-binding protein CML17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQN4]
Coordinates
chr1:+:11639741..11640393
Molecular Weight (calculated)
18418.8 Da
IEP (calculated)
4.583
GRAVY (calculated)
-0.317
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHKVSKKLD EEQINELREI FRSFDRNKDG SLTQLELGSL LRALGVKPSP DQFETLIDKA DTKSNGLVEF PEFVALVSPE LLSPAKRTTP YTEEQLLRLF
101: RIFDTDGNGF ITAAELAHSM AKLGHALTVA ELTGMIKEAD SDGDGRINFQ EFAKAINSAA FDDIWG
101: RIFDTDGNGF ITAAELAHSM AKLGHALTVA ELTGMIKEAD SDGDGRINFQ EFAKAINSAA FDDIWG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.