Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04172 | Canola | cytosol | 95.65 | 95.65 |
| Bra017355.1-P | Field mustard | cytosol | 95.65 | 95.65 |
| CDY51605 | Canola | cytosol | 95.65 | 95.06 |
| Bra025149.1-P | Field mustard | cytosol | 95.03 | 94.44 |
| CDY48076 | Canola | cytosol | 94.41 | 93.83 |
| CDY59874 | Canola | cytosol | 93.79 | 93.79 |
| Solyc01g010020.2.1 | Tomato | cytosol | 76.4 | 76.4 |
| PGSC0003DMT400041342 | Potato | cytosol, mitochondrion | 75.78 | 75.78 |
| KRH07628 | Soybean | cytosol | 75.16 | 75.62 |
| VIT_01s0011g02470.t01 | Wine grape | cytosol | 75.78 | 75.31 |
| AT1G18530.1 | Thale cress | cytosol | 72.67 | 74.52 |
| GSMUA_Achr1P25220_001 | Banana | cytosol | 68.32 | 67.48 |
| GSMUA_Achr9P21860_001 | Banana | cytosol, mitochondrion | 66.46 | 65.64 |
| PGSC0003DMT400019291 | Potato | cytosol | 47.2 | 65.52 |
| GSMUA_Achr8P29750_001 | Banana | cytosol, mitochondrion | 64.6 | 63.41 |
| Zm00001d053188_P001 | Maize | cytosol | 40.99 | 60.55 |
| TraesCS1A01G416100.1 | Wheat | cytosol | 62.11 | 58.14 |
| Os05t0577500-01 | Rice | cytosol, mitochondrion | 61.49 | 57.23 |
| TraesCS1B01G446400.1 | Wheat | plastid | 62.11 | 57.14 |
| Zm00001d039110_P001 | Maize | cytosol | 60.25 | 56.4 |
| EES19997 | Sorghum | plastid | 60.25 | 52.15 |
| AT3G03000.1 | Thale cress | cytosol | 49.69 | 48.48 |
| AT1G32250.1 | Thale cress | cytosol | 49.07 | 47.59 |
| EES03239 | Sorghum | plastid | 59.63 | 40.68 |
| Zm00001d044411_P001 | Maize | plastid | 59.01 | 40.6 |
| Os01t0604500-01 | Rice | cytosol | 59.63 | 38.55 |
| HORVU3Hr1G052770.1 | Barley | cytosol | 57.76 | 37.65 |
| AT3G56800.1 | Thale cress | cytosol | 34.78 | 37.58 |
| AT5G21274.1 | Thale cress | cytosol | 34.16 | 36.91 |
| TraesCS3B01G246100.1 | Wheat | cytosol | 57.76 | 36.47 |
| TraesCS3D01G217900.1 | Wheat | cytosol | 57.14 | 36.08 |
| AT1G66410.2 | Thale cress | cytosol | 35.4 | 35.85 |
| TraesCS3A01G216300.1 | Wheat | cytosol | 55.9 | 35.29 |
| AT2G41110.2 | Thale cress | cytosol | 34.78 | 34.78 |
| AT4G14640.1 | Thale cress | cytosol | 32.3 | 34.44 |
| AT5G37780.3 | Thale cress | cytosol | 35.4 | 32.57 |
| AT2G27030.3 | Thale cress | cytosol | 35.4 | 31.49 |
| AT3G22930.1 | Thale cress | cytosol | 32.92 | 30.64 |
| AT3G43810.2 | Thale cress | cytosol | 35.4 | 26.64 |
| AT2G41090.1 | Thale cress | cytosol | 30.43 | 25.65 |
| AT3G50360.1 | Thale cress | cytosol | 26.71 | 25.44 |
| AT4G37010.2 | Thale cress | cytosol, mitochondrion | 26.71 | 25.15 |
| AT1G62820.1 | Thale cress | cytosol | 22.98 | 25.0 |
| AT1G12310.1 | Thale cress | cytosol | 22.98 | 25.0 |
| AT2G41100.1 | Thale cress | cytosol | 34.78 | 17.28 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | EntrezGene:822147 | UniProt:A0A178VDG2 | ProteinID:AEE77041.1 | ArrayExpress:AT3G25600 |
| EnsemblPlantsGene:AT3G25600 | RefSeq:AT3G25600 | TAIR:AT3G25600 | RefSeq:AT3G25600-TAIR-G | EnsemblPlants:AT3G25600.1 | TAIR:AT3G25600.1 |
| ProteinID:BAB03079.1 | EMBL:BT003928 | EMBL:BT014869 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0008150 | GO:GO:0046872 | InterPro:IPR002048 |
| RefSeq:NP_189188.4 | ProteinID:OAP04340.1 | PFAM:PF13499 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR44256 | PANTHER:PTHR44256:SF6 | UniProt:Q9LI84 | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI000000C1EA | : | : | : | : |
Description
CML16Probable calcium-binding protein CML16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LI84]
Coordinates
chr3:+:9306776..9307967
Molecular Weight (calculated)
17643.0 Da
IEP (calculated)
4.212
GRAVY (calculated)
-0.171
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTKPTDQI KQLKDIFARF DMDKDGSLTQ LELAALLRSL GIKPRGDQIS LLLNQIDRNG NGSVEFDELV VAILPDINEE VLINQEQLME VFRSFDRDGN
101: GSITAAELAG SMAKMGHPLT YRELTEMMTE ADSNGDGVIS FNEFSHIMAK SAADFLGLTA S
101: GSITAAELAG SMAKMGHPLT YRELTEMMTE ADSNGDGVIS FNEFSHIMAK SAADFLGLTA S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.