Factsheet for Bra017355.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
vacuole 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04172	Canola	cytosol	100.0	100.0
CDY59874	Canola	cytosol	98.14	98.14
Bra025149.1-P	Field mustard	cytosol	97.52	96.91
AT3G25600.1	Thale cress	cytosol	95.65	95.65
KRH07628	Soybean	cytosol	77.02	77.5
VIT_01s0011g02470.t01	Wine grape	cytosol	77.02	76.54
Bra025896.1-P	Field mustard	cytosol	73.91	75.8
Solyc01g010020.2.1	Tomato	cytosol	75.78	75.78
PGSC0003DMT400041342	Potato	cytosol, mitochondrion	75.78	75.78
GSMUA_Achr1P25220_001	Banana	cytosol	68.94	68.1
GSMUA_Achr9P21860_001	Banana	cytosol, mitochondrion	67.7	66.87
PGSC0003DMT400019291	Potato	cytosol	47.83	66.38
GSMUA_Achr8P29750_001	Banana	cytosol, mitochondrion	65.84	64.63
Zm00001d053188_P001	Maize	cytosol	41.61	61.47
TraesCS1A01G416100.1	Wheat	cytosol	64.6	60.47
TraesCS1B01G446400.1	Wheat	plastid	64.6	59.43
Os05t0577500-01	Rice	cytosol, mitochondrion	63.35	58.96
Zm00001d039110_P001	Maize	cytosol	62.11	58.14
EES19997	Sorghum	plastid	62.11	53.76
Bra040770.1-P	Field mustard	cytosol	49.07	47.59
Bra021379.1-P	Field mustard	cytosol	48.45	46.15
EES03239	Sorghum	plastid	60.87	41.53
Zm00001d044411_P001	Maize	plastid	60.25	41.45
Bra025438.1-P	Field mustard	cytosol	27.95	39.82
Os01t0604500-01	Rice	cytosol	60.87	39.36
Bra004166.1-P	Field mustard	cytosol	36.02	38.93
HORVU3Hr1G052770.1	Barley	cytosol	59.01	38.46
Bra000214.1-P	Field mustard	cytosol	35.4	38.26
Bra002368.1-P	Field mustard	cytosol	35.4	38.26
Bra003251.1-P	Field mustard	cytosol	35.4	38.26
Bra006595.1-P	Field mustard	cytosol	35.4	38.26
Bra012037.1-P	Field mustard	cytosol	35.4	38.26
Bra014671.1-P	Field mustard	cytosol	35.4	38.26
Bra019453.1-P	Field mustard	cytosol	35.4	38.26
Bra020155.1-P	Field mustard	cytosol	35.4	38.26
Bra034981.1-P	Field mustard	cytosol	34.16	37.93
Bra007269.1-P	Field mustard	cytosol	34.78	37.58
TraesCS3B01G246100.1	Wheat	cytosol	59.01	37.25
TraesCS3D01G217900.1	Wheat	cytosol	58.39	36.86
TraesCS3A01G216300.1	Wheat	cytosol	57.76	36.47
Bra001892.1-P	Field mustard	cytosol	34.78	36.36
Bra023786.1-P	Field mustard	cytosol	34.78	35.9
Bra033898.1-P	Field mustard	cytosol	34.16	35.48
Bra039723.1-P	Field mustard	cytosol	31.68	33.33
Bra034317.1-P	Field mustard	cytosol	36.02	32.4
Bra026976.1-P	Field mustard	cytosol	23.6	25.68
Bra019756.1-P	Field mustard	cytosol	22.36	24.32

Protein Annotations

EnsemblPlants:Bra017355.1	EnsemblPlants:Bra017355.1-P	EnsemblPlantsGene:Bra017355	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR44256
PANTHER:PTHR44256:SF6	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SMART:SM00054	SUPFAM:SSF47473
UniParc:UPI00025421D9	UniProt:M4DLH4	MapMan:35.1	:	:	:

Description

AT3G25600 (E=9e-083) | calcium ion binding

Coordinates

chrA09:-:14515040..14515525

Molecular Weight (calculated)

17581.0 Da

IEP (calculated)

4.144

GRAVY (calculated)

-0.138

Length

161 amino acids

Sequence
(BLAST)

001: MASAKPTDQI KQLKDIFTRF DMDGDGSLTQ LELAALLRSL GIKPRGDQIS LLLNQIDRNG NGSVEFDELV VAILPDLNEE VLINQEQLME VFRSFDRDGN
101: GQITAAELAG SMAKMGHPLT YRELTEMMTE ADSNGDGVIS FNEFAHIMAK SAADFLGLTA A

Best Arabidopsis Sequence Match ( AT3G25600.1 )
(BLAST)

001: MASTKPTDQI KQLKDIFARF DMDKDGSLTQ LELAALLRSL GIKPRGDQIS LLLNQIDRNG NGSVEFDELV VAILPDINEE VLINQEQLME VFRSFDRDGN
101: GSITAAELAG SMAKMGHPLT YRELTEMMTE ADSNGDGVIS FNEFSHIMAK SAADFLGLTA S

Arabidopsis Description

CML16Probable calcium-binding protein CML16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LI84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.