Factsheet for Bra019756.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 3
plasma membrane 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010055.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12310.1	Bra010055.1-P	AT5G62070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98074	Canola	cytosol	98.65	98.65
CDY30070	Canola	cytosol	98.65	98.65
AT1G12310.1	Thale cress	cytosol	95.95	95.95
Bra026976.1-P	Field mustard	cytosol	94.59	94.59
CDY21044	Canola	cytosol	94.59	94.59
CDY31259	Canola	cytosol	94.59	94.59
AT1G62820.1	Thale cress	cytosol	90.54	90.54
VIT_02s0241g00140.t01	Wine grape	cytosol	86.49	87.07
KRH77406	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	85.81	86.39
KRH28027	Soybean	cytosol, endoplasmic reticulum, nucleus	85.81	86.39
PGSC0003DMT400070433	Potato	cytosol	85.14	85.71
Solyc03g083520.2.1	Tomato	cytosol, nucleus	84.46	83.33
Solyc11g072270.1.1	Tomato	cytosol	85.14	80.77
Zm00001d035095_P001	Maize	cytosol, extracellular, mitochondrion	75.68	75.68
TraesCS7A01G316100.1	Wheat	cytosol, unclear	75.0	75.0
OQU79799	Sorghum	cytosol	75.0	75.0
GSMUA_Achr3P26750_001	Banana	cytosol, plasma membrane	75.0	75.0
Os08t0117400-01	Rice	plasma membrane	74.32	74.32
TraesCS7B01G217200.1	Wheat	cytosol, plastid	74.32	74.32
TraesCS7D01G313100.1	Wheat	cytosol	73.65	73.65
Zm00001d049665_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	72.97	72.97
KRH04023	Soybean	cytosol	71.62	72.11
HORVU7Hr1G075240.1	Barley	cytosol, plastid	74.32	56.41
Bra000214.1-P	Field mustard	cytosol	49.32	48.99
Bra003251.1-P	Field mustard	cytosol	49.32	48.99
Bra014671.1-P	Field mustard	cytosol	49.32	48.99
Bra007269.1-P	Field mustard	cytosol	48.65	48.32
Bra020155.1-P	Field mustard	cytosol	47.97	47.65
Bra002368.1-P	Field mustard	cytosol	47.97	47.65
Bra006595.1-P	Field mustard	cytosol	47.97	47.65
Bra019453.1-P	Field mustard	cytosol	47.3	46.98
Bra012037.1-P	Field mustard	cytosol	47.3	46.98
Bra004166.1-P	Field mustard	cytosol	47.3	46.98
Bra034981.1-P	Field mustard	cytosol	45.27	46.21
Bra025438.1-P	Field mustard	cytosol	33.11	43.36
Bra034317.1-P	Field mustard	cytosol	48.65	40.22
Bra001892.1-P	Field mustard	cytosol	38.51	37.01
Bra033898.1-P	Field mustard	cytosol	37.16	35.48
Bra023786.1-P	Field mustard	cytosol	37.16	35.26
Bra039723.1-P	Field mustard	cytosol	35.14	33.99
Bra021379.1-P	Field mustard	cytosol	30.41	26.63
Bra025896.1-P	Field mustard	cytosol	27.7	26.11
Bra040770.1-P	Field mustard	cytosol	27.7	24.7
Bra017355.1-P	Field mustard	cytosol	24.32	22.36
Bra025149.1-P	Field mustard	cytosol	24.32	22.22

Protein Annotations

EnsemblPlants:Bra019756.1	EnsemblPlants:Bra019756.1-P	EnsemblPlantsGene:Bra019756	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR23050
PANTHER:PTHR23050:SF214	PFAM:PF13405	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI000253ECF3	UniProt:M4DTB3	MapMan:35.1	:	:

Description

AT1G12310 (E=3e-077) | calmodulin, putative

Coordinates

chrA06:+:4591821..4592267

Molecular Weight (calculated)

16401.6 Da

IEP (calculated)

4.539

GRAVY (calculated)

-0.327

Length

148 amino acids

Sequence
(BLAST)

001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAPL KSITASESLT APFDFNRFLD LMAKHLKTEP FDRQLRDACK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK

Best Arabidopsis Sequence Match ( AT1G12310.1 )
(BLAST)

001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK

Arabidopsis Description

CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.