Factsheet for Bra010055.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025315.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62070.1	Bra025315.1-P	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00253	Canola	plastid	95.56	98.22
CDX86928	Canola	mitochondrion, plastid	94.32	96.95
CDY00251	Canola	plastid	96.54	95.13
AT5G62070.1	Thale cress	cytosol, plastid	81.23	81.64
Bra005929.1-P	Field mustard	plastid	57.28	67.64
Bra009281.1-P	Field mustard	mitochondrion	58.27	66.67
KRG91452	Soybean	cytosol	46.91	41.67
KRH09113	Soybean	cytosol	48.89	41.51
KRH38565	Soybean	cytosol	48.64	40.87
Bra012855.1-P	Field mustard	mitochondrion	10.37	40.78
KRH35361	Soybean	cytosol, mitochondrion	46.67	40.73
GSMUA_Achr8P11920_001	Banana	cytosol	36.05	40.67
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	38.02	35.16
VIT_16s0100g00620.t01	Wine grape	cytosol	28.89	35.14
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	39.01	34.42
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	35.8	33.8
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	40.0	33.33
EES12687	Sorghum	cytosol, mitochondrion	38.27	33.19
Os04t0569900-01	Rice	cytosol, mitochondrion	37.78	32.97
Bra014304.1-P	Field mustard	cytosol, mitochondrion	23.46	32.76
Zm00001d002630_P002	Maize	mitochondrion	36.54	32.39
PGSC0003DMT400037043	Potato	mitochondrion, nucleus	38.02	32.35
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	36.05	31.74
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	35.8	31.39
Bra001633.1-P	Field mustard	cytosol	28.89	31.37
Zm00001d026084_P001	Maize	mitochondrion	38.02	31.05
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	32.35	30.97
Bra020822.1-P	Field mustard	mitochondrion, plastid	32.1	30.95
HORVU0Hr1G005320.2	Barley	cytosol	27.65	30.77
Bra013672.1-P	Field mustard	mitochondrion, nucleus	37.28	30.44
Bra022163.1-P	Field mustard	cytosol	28.89	30.23
Bra021181.1-P	Field mustard	cytosol	28.4	29.56
Bra019337.1-P	Field mustard	nucleus	33.83	29.09
Bra030407.1-P	Field mustard	cytosol	23.46	28.19
Bra036812.1-P	Field mustard	mitochondrion	10.62	27.92
Bra024161.1-P	Field mustard	mitochondrion	24.94	26.03
Bra028807.1-P	Field mustard	mitochondrion	23.7	25.26
Bra039715.1-P	Field mustard	nucleus, plastid	22.96	25.14
Bra036898.1-P	Field mustard	cytosol	22.22	24.59
Bra009498.1-P	Field mustard	cytosol, mitochondrion	22.96	24.35
Bra023414.1-P	Field mustard	nucleus	19.75	20.25
Bra006201.1-P	Field mustard	nucleus	19.26	17.45
Bra008163.1-P	Field mustard	cytosol	19.26	15.12
Bra026581.1-P	Field mustard	cytosol	18.02	12.63
Bra025690.1-P	Field mustard	cytosol, mitochondrion	17.04	12.23
Bra024806.1-P	Field mustard	cytosol, plastid	16.79	11.62
Bra016536.1-P	Field mustard	nucleus	18.77	11.29
Bra017409.1-P	Field mustard	cytosol, plastid	15.56	11.15
Bra016490.1-P	Field mustard	nucleus	18.77	10.28
Bra019653.1-P	Field mustard	cytosol	15.8	10.19
Bra025777.1-P	Field mustard	nucleus, plastid	16.79	9.14

Protein Annotations

EnsemblPlants:Bra010055.1	EnsemblPlants:Bra010055.1-P	EnsemblPlantsGene:Bra010055	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF11
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	SEG:seg	UniParc:UPI000253F66D	UniProt:M4D0Q6
MapMan:35.2	:	:	:	:	:

Description

AT5G62070 (E=3e-087) IQD23 | IQD23 (IQ-domain 23); calmodulin binding

Coordinates

chrA06:-:18900194..18903363

Molecular Weight (calculated)

45062.6 Da

IEP (calculated)

11.015

GRAVY (calculated)

-0.829

Length

405 amino acids

Sequence
(BLAST)

001: MGFFGRLFGS KKQDSSTNRR RWSFTTRSSK PASTSSSKRR SYPTESPSVN EEESGDKHAI AVAAATAAVA EAALAAAHAA AEVVRLTSGT GGRNGGGSNR
101: RWALEYLAAV KIQSAFRGYL FFIAIRSRGG CPARRALRAL KALVKLQALV RGHIVRKQTA DMFRRMQTLV RLQAQARTRA SRSSHSSASF HSSTALLFPS
201: STPSPRSLHT RSLSNAEVIP MDHRSHSKRV DWQTEEDEDK ILEVDTWKPR LHHPKPLRSE RNNESPRKRQ QSLLAPRSTE NSPQVGSSGS RRRTPFTPTT
301: TRSEYSWGCN NYYYSGYHPN YMANTESYKA KVRSQSAPKQ RLEVSNETSG YKKSVQGQYY YYTAVAEESL DAGSPGYYGG EGGGASERLN RNQSEKTRMR
401: SSFLV

Best Arabidopsis Sequence Match ( AT5G62070.1 )
(BLAST)

001: MGFFGRLFGS KKKSDKAASS RDKRRWSFTT RSSNSSKRAP AVTSASVVEQ NGLDADKHAI AVAAATAAVA EAALTAAHAA AEVVRLTSGN GGRNVGGGGN
101: SSVFQIGRSN RRWAQENIAA MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS RSSHSSASFH SSTALLFPSS
201: SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRTPFTPTS
301: RSEYSWGCNN YYYSGYHPNY MANTESYKAK VRSQSAPKQR VEVSNETSGY KRSVQGQYYY YTAVEEESLD VGSAGYYGGG GGDSDRLNRN QSAKSRMHSS
401: FLV

Arabidopsis Description

IQD23At5g62070/mtg10_90 [Source:UniProtKB/TrEMBL;Acc:Q9FIT1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.