Factsheet for PGSC0003DMT400037043

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62070.1	PGSC0003DMT400001405	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	95.38	93.42
GSMUA_Achr8P11920_001	Banana	cytosol	32.98	43.73
CDX98994	Canola	mitochondrion	31.93	42.94
Bra005929.1-P	Field mustard	plastid	30.88	42.86
CDX78285	Canola	plastid	30.88	42.73
CDX70019	Canola	cytosol, mitochondrion	31.72	42.66
KRH35361	Soybean	cytosol, mitochondrion	41.39	42.46
KRG91452	Soybean	cytosol	40.34	42.11
Bra009281.1-P	Field mustard	mitochondrion	31.3	42.09
KRH09113	Soybean	cytosol	42.02	41.93
KRH38565	Soybean	cytosol	41.81	41.29
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	38.03	39.43
EES12687	Sorghum	cytosol, mitochondrion	38.66	39.4
HORVU0Hr1G005320.2	Barley	cytosol	30.04	39.29
CDY00253	Canola	plastid	32.35	39.09
CDX86928	Canola	mitochondrion, plastid	32.14	38.83
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	37.18	38.48
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	37.18	38.31
Zm00001d002630_P002	Maize	mitochondrion	36.76	38.29
Os04t0569900-01	Rice	cytosol, mitochondrion	37.18	38.15
Bra010055.1-P	Field mustard	plastid	32.35	38.02
CDX81042	Canola	plastid	30.88	37.98
VIT_16s0100g00620.t01	Wine grape	cytosol	26.47	37.84
AT5G62070.1	Thale cress	cytosol, plastid	31.93	37.72
CDY00251	Canola	plastid	32.35	37.47
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	33.4	36.3
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	32.35	35.9
Zm00001d026084_P001	Maize	mitochondrion	37.18	35.69
PGSC0003DMT400007855	Potato	cytosol, plastid	37.18	35.4
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	31.3	35.22
PGSC0003DMT400014796	Potato	cytosol	26.26	34.72
AT5G07240.2	Thale cress	plastid	31.93	34.0
PGSC0003DMT400009431	Potato	mitochondrion	7.56	27.48
PGSC0003DMT400000953	Potato	cytosol	18.91	24.73
PGSC0003DMT400033127	Potato	cytosol, mitochondrion	20.17	23.7
PGSC0003DMT400042595	Potato	nucleus	7.35	23.03
PGSC0003DMT400017589	Potato	cytosol, plastid	17.23	19.07
PGSC0003DMT400003322	Potato	cytosol	21.64	18.46
PGSC0003DMT400016500	Potato	nucleus	10.29	18.42
PGSC0003DMT400045444	Potato	cytosol, plastid	17.02	14.57
PGSC0003DMT400021096	Potato	nucleus	6.09	13.12
PGSC0003DMT400009545	Potato	nucleus	19.12	10.48

Protein Annotations

EnsemblPlants:PGSC0003DMT400037043	EnsemblPlantsGene:PGSC0003DMG400014276	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF11	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	PGSC:PGSC0003DMG400014276	SEG:seg	UniParc:UPI000296D5D5	UniProt:M1B4Q4
MapMan:35.2	:	:	:	:	:

Description

Calmodulin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014276]

Coordinates

chr3:+:42428136..42431606

Molecular Weight (calculated)

52429.2 Da

IEP (calculated)

10.838

GRAVY (calculated)

-0.950

Length

476 amino acids

Sequence
(BLAST)

001: MGKASRWLRS LLGSKKSPSE SSPPAKDGKN NKRGLRKSSN GSGRNTGPEI AYGNEDPPAS PYAEALDANK HAIAAALAAA QAAAEVVRLT SGKRSASAYA
101: SSNTERRREW AAVKIQSEFR AYLARRALRA LKGLVKLQAL VRGRIVRKQS ADMLRRMQAM ARIQARASAN RNVTSDPSHS SIRASRFEHP GIATPRKYDP
201: QQYSFNCKYH GPNLKKSGSK LKPHESLGQD RSHLASQYIH HWMEECAKNG YGDTSLKKNG GDHDESTDKI LEIDTWKPRL HPKPSEKKSH NSHYSSWNDN
301: AHGTRTVNSM SKHLANHMKP NPSISSGEVS SLRSLAFCQD TDQPVAWTVE HSPGVHSTLS RPGSSSRRGP SPSRSECSRS LFGDYLGHPN YMSNTESYLA
401: KLRSHSAPRQ RVQFEKIGST KYVDGLVDAD TNSEKSWRSL GNFRNKAKPG SGLSDRVGTP DHRSAVRSSS PFGPRQ

Best Arabidopsis Sequence Match ( AT4G23060.1 )
(BLAST)

001: MGKASRWFRS LFGVKKPDPG YPDLSVETPS RSTSSNLKRR WSFVKSKREK ESTPINQVPH TPSLPNSTPP PPSHHQSSPR RRRKQKPMWE DEGSEDSDKH
101: AIAVAAATAA VAEAAVAAAN AAAAVVRLTS TSGRSTRSPV KARFSDGFDD VVAHGSKFYG HGRDSCELAV IKIQSIFRGY LAKRALRALK GLVRLQAIVR
201: GHIERKRMSV HLRRMHALVR AQARVRATRV IVTPESSSSQ SNNTKSSHFQ NPGPPTPEKL EHSISSRSSK LAHSHLFKRN GSKASDNNRL YPAHRETFSA
301: TDEEEKILQI DRKHISSYTR RNRPDMFYSS HLILDNAGLS EPVFATPFSP SSSHEEITSQ FCTAENSPQL YSATSRSKRS AFTASSIAPS DCTKSCCDGD
401: HPSYMACTES SRAKARSASA PKSRPQLFYE RPSSKRFGFV DLPYCGDTKS GPQKGSALHT SFMNKAYPGS GRLDRLGMPI GYRY

Arabidopsis Description

IQD22Calmodulin binding protein IQD22 [Source:UniProtKB/TrEMBL;Acc:Q2NNE0]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.