CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH56614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62070.1	KRG93305	AT3G27960.1	21798944
AT5G62070.1	KRH56614	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38565	Soybean	cytosol	94.13	93.15
KRG91452	Soybean	cytosol	66.67	69.74
KRH35361	Soybean	cytosol, mitochondrion	66.04	67.89
Bra005929.1-P	Field mustard	plastid	38.99	54.23
CDX78285	Canola	plastid	38.99	54.07
Bra009281.1-P	Field mustard	mitochondrion	39.62	53.39
CDX98994	Canola	mitochondrion	39.62	53.39
CDX70019	Canola	cytosol, mitochondrion	39.41	53.11
CDX86928	Canola	mitochondrion, plastid	41.09	49.75
CDY00253	Canola	plastid	41.09	49.75
AT5G62070.1	Thale cress	cytosol, plastid	41.72	49.38
Bra010055.1-P	Field mustard	plastid	41.51	48.89
GSMUA_Achr8P11920_001	Banana	cytosol	36.69	48.75
CDX81042	Canola	plastid	39.2	48.32
CDY00251	Canola	plastid	41.3	47.93
VIT_16s0100g00620.t01	Wine grape	cytosol	30.61	43.84
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	41.72	43.36
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	39.41	42.92
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	43.4	42.59
PGSC0003DMT400037043	Potato	mitochondrion, nucleus	41.93	42.02
AT5G07240.2	Thale cress	plastid	39.2	41.83
Zm00001d002630_P002	Maize	mitochondrion	40.04	41.79
Os04t0569900-01	Rice	cytosol, mitochondrion	40.25	41.38
EES12687	Sorghum	cytosol, mitochondrion	40.46	41.33
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	39.83	41.13
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	36.9	41.03
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	39.41	40.87
HORVU0Hr1G005320.2	Barley	cytosol	30.4	39.84
KRH57246	Soybean	cytosol	36.9	39.55
KRH03972	Soybean	cytosol	36.69	39.15
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	34.59	39.01
Zm00001d026084_P001	Maize	mitochondrion	40.46	38.91
KRH77498	Soybean	cytosol, mitochondrion	31.45	37.88
KRH07958	Soybean	mitochondrion	10.27	34.75
KRH47199	Soybean	cytosol	28.51	34.34
KRH48993	Soybean	plastid	6.71	34.04
KRH44268	Soybean	cytosol	27.88	33.08
KRH60203	Soybean	cytosol, mitochondrion	24.32	32.22
KRH74242	Soybean	cytosol, mitochondrion	26.83	30.48
KRH48992	Soybean	endoplasmic reticulum	21.38	30.18
KRH35475	Soybean	cytosol	29.56	30.06
KRG91354	Soybean	cytosol, plastid	29.35	29.91
KRH09951	Soybean	cytosol	23.27	29.37
KRH41488	Soybean	cytosol, mitochondrion	26.83	29.36
KRH23382	Soybean	cytosol	23.27	29.21
KRH69109	Soybean	nucleus	23.06	26.38
KRH31669	Soybean	cytosol, mitochondrion	22.85	25.77
KRH23930	Soybean	nucleus	24.32	25.22
KRH39865	Soybean	nucleus	23.9	24.31
KRH68719	Soybean	cytosol	18.87	24.06
KRG96957	Soybean	cytosol	18.24	23.51
KRH33197	Soybean	cytosol, mitochondrion	18.87	23.08
KRH29958	Soybean	cytosol, mitochondrion	21.8	22.76
KRH63082	Soybean	cytosol	20.96	22.22
KRH56937	Soybean	cytosol	20.96	17.06
KRH63392	Soybean	cytosol	20.75	16.98
KRG99144	Soybean	cytosol, plastid	19.29	16.82
KRH54515	Soybean	cytosol	20.34	16.61
KRH03447	Soybean	nucleus	20.34	16.5
KRH45861	Soybean	plastid	18.87	16.45
KRH69321	Soybean	cytosol, mitochondrion	16.77	14.21
KRH74806	Soybean	cytosol, plastid	16.35	13.85
KRH51729	Soybean	cytosol	21.59	12.13
KRH61064	Soybean	nucleus	11.95	7.84

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100785181	MapMan:35.2	EMBL:ACUP02010271	InterPro:DUF4005	EnsemblPlantsGene:GLYMA_16G196900
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	UniProt:K7MIL1
EnsemblPlants:KRH09113	ProteinID:KRH09113	ProteinID:KRH09113.1	InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF11	SMART:SM00015	SUPFAM:SSF52540	UniParc:UPI000233ED82
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:35841279..35846894

Molecular Weight (calculated)

52795.3 Da

IEP (calculated)

10.610

GRAVY (calculated)

-0.761

Length

477 amino acids

Sequence
(BLAST)

001: MGFLRRLFGG KKHHNPPPSS DASKPSKDKK TWSFVKHSTR YKPNTLPTTL NNNSNFDPST SSSPFPESLD ANKHAIAVAA ATAAVAEAAL AAAHAAAEVV
101: RLTSSTGCAS SLPAAAPQSR RVANETTAAA VKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTSD MLRRMQTLVR LQSRARATRG NLSDNMHSFK
201: SSLSHYPVPE DYQHSLRAYS TKFDGSILKR CSSNANFRDI DVEKARFGSH WLDSWMEENS WRQTRDASLK NGHLDDEKSD KILEVDTWKP HLNSHHSSGS
301: SFQTSSHHYL SSDYNNENFV AYESPSKRSS KALNPSLSSR EVLPFGSLKS HKGKEEAALQ NVEDSPQAFS ASSRLGSDAR RGPFTPTKSE CAWSFFSGYP
401: GHPNYMANTE SSRAKVRSHS APRQRMEFER YGHSTRRSLQ GLWEAGPSSD RDSDFRSKAY ATTTSSCLNR IGSANLR

Best Arabidopsis Sequence Match ( AT5G62070.1 )
(BLAST)

001: MGFFGRLFGS KKKSDKAASS RDKRRWSFTT RSSNSSKRAP AVTSASVVEQ NGLDADKHAI AVAAATAAVA EAALTAAHAA AEVVRLTSGN GGRNVGGGGN
101: SSVFQIGRSN RRWAQENIAA MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS RSSHSSASFH SSTALLFPSS
201: SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRTPFTPTS
301: RSEYSWGCNN YYYSGYHPNY MANTESYKAK VRSQSAPKQR VEVSNETSGY KRSVQGQYYY YTAVEEESLD VGSAGYYGGG GGDSDRLNRN QSAKSRMHSS
401: FLV

Arabidopsis Description

IQD23At5g62070/mtg10_90 [Source:UniProtKB/TrEMBL;Acc:Q9FIT1]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.