CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH56614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62070.1	KRG93305	AT3G27960.1	21798944
AT5G62070.1	KRH56614	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09113	Soybean	cytosol	93.15	94.13
KRG91452	Soybean	cytosol	65.56	69.3
KRH35361	Soybean	cytosol, mitochondrion	65.35	67.89
Bra005929.1-P	Field mustard	plastid	38.17	53.64
CDX78285	Canola	plastid	38.17	53.49
Bra009281.1-P	Field mustard	mitochondrion	39.21	53.39
CDX98994	Canola	mitochondrion	39.21	53.39
CDX70019	Canola	cytosol, mitochondrion	39.0	53.11
CDX86928	Canola	mitochondrion, plastid	40.46	49.49
CDY00253	Canola	plastid	40.46	49.49
AT5G62070.1	Thale cress	cytosol, plastid	41.08	49.13
GSMUA_Achr8P11920_001	Banana	cytosol	36.31	48.75
Bra010055.1-P	Field mustard	plastid	40.87	48.64
CDX81042	Canola	plastid	38.38	47.8
CDY00251	Canola	plastid	40.66	47.69
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	41.29	43.36
VIT_16s0100g00620.t01	Wine grape	cytosol	29.67	42.94
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	42.95	42.59
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	38.38	42.24
PGSC0003DMT400037043	Potato	mitochondrion, nucleus	41.29	41.81
AT5G07240.2	Thale cress	plastid	38.59	41.61
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	36.72	41.26
Zm00001d002630_P002	Maize	mitochondrion	39.0	41.14
Os04t0569900-01	Rice	cytosol, mitochondrion	39.21	40.73
EES12687	Sorghum	cytosol, mitochondrion	39.42	40.69
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	38.8	40.48
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	38.38	40.22
HORVU0Hr1G005320.2	Barley	cytosol	29.67	39.29
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	34.44	39.24
Zm00001d026084_P001	Maize	mitochondrion	39.42	38.31
KRH03972	Soybean	cytosol	35.48	38.26
KRH57246	Soybean	cytosol	35.27	38.2
KRH77498	Soybean	cytosol, mitochondrion	30.29	36.87
KRH07958	Soybean	mitochondrion	10.17	34.75
KRH47199	Soybean	cytosol	28.01	34.09
KRH48993	Soybean	plastid	6.43	32.98
KRH44268	Soybean	cytosol	27.39	32.84
KRH60203	Soybean	cytosol, mitochondrion	24.07	32.22
KRH35475	Soybean	cytosol	29.46	30.28
KRH74242	Soybean	cytosol, mitochondrion	26.35	30.24
KRH48992	Soybean	endoplasmic reticulum	21.16	30.18
KRG91354	Soybean	cytosol, plastid	29.25	30.13
KRH41488	Soybean	cytosol, mitochondrion	26.35	29.13
KRH09951	Soybean	cytosol	22.82	29.1
KRH23382	Soybean	cytosol	22.82	28.95
KRH69109	Soybean	nucleus	23.24	26.86
KRH31669	Soybean	cytosol, mitochondrion	22.82	26.0
KRH23930	Soybean	nucleus	23.86	25.0
KRH39865	Soybean	nucleus	23.44	24.09
KRH68719	Soybean	cytosol	18.67	24.06
KRH33197	Soybean	cytosol, mitochondrion	19.09	23.59
KRG96957	Soybean	cytosol	18.05	23.51
KRH29958	Soybean	cytosol, mitochondrion	21.37	22.54
KRH63082	Soybean	cytosol	20.33	21.78
KRH56937	Soybean	cytosol	20.95	17.24
KRH63392	Soybean	cytosol	20.75	17.15
KRG99144	Soybean	cytosol, plastid	19.09	16.82
KRH54515	Soybean	cytosol	20.33	16.78
KRH03447	Soybean	nucleus	20.33	16.67
KRH45861	Soybean	plastid	18.88	16.64
KRH69321	Soybean	cytosol, mitochondrion	16.6	14.21
KRH74806	Soybean	cytosol, plastid	16.18	13.85
KRH51729	Soybean	cytosol	21.78	12.37
KRH61064	Soybean	nucleus	11.83	7.84

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100775743	MapMan:35.2	EMBL:ACUP02005850	InterPro:DUF4005	EnsemblPlantsGene:GLYMA_09G143900
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	UniProt:K7LDX3
EnsemblPlants:KRH38565	ProteinID:KRH38565	ProteinID:KRH38565.1	InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF11	SMART:SM00015	SUPFAM:SSF52540	UniParc:UPI0002338749
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:35766628..35772200

Molecular Weight (calculated)

53339.0 Da

IEP (calculated)

10.602

GRAVY (calculated)

-0.766

Length

482 amino acids

Sequence
(BLAST)

001: MGFLRRLFGG KKHHNNPPPS SSDASKPNKD NKKTWSFIKH STRYKPNTLP TTLNNNSNFD SSTSSAPFTE SLDANKHAIA VAAATAAVAE AALAAAHAAA
101: EVVRLTSGTG GVSSRPAPAP QPRRVAEETT AAAVKIQSAF RGYLARRALR ALKALVKLQA LVRGHIVRKQ TSDMLRRMQT LVRLQSRARA TRGNLSDNMH
201: SFKSPLSHYP VPEDYKHSLR AYSTKFDGSI LKRCSSNANF RDIDVEKARF GSHWLDSWME ENSWRQTRDA SLKIGRLDDE KSDKILEVDT WKPHLNSHHS
301: SGSSYQTSSH HYLYSDYNNE NFVAYESPSK GSSKGLNPSL SSREVLPFGS LTFHKGKEEV AALPNVEDSP QAFSASSRLG SGGARRGPFT PTKSECAWSF
401: FSGYPGHPNY MANTESSRAK VRSHSAPRQR MEFERYGHST RRSLQGLWEA EPSSDRDSDF RSQAYATTTS SSLNRIGSAN LR

Best Arabidopsis Sequence Match ( AT5G62070.1 )
(BLAST)

001: MGFFGRLFGS KKKSDKAASS RDKRRWSFTT RSSNSSKRAP AVTSASVVEQ NGLDADKHAI AVAAATAAVA EAALTAAHAA AEVVRLTSGN GGRNVGGGGN
101: SSVFQIGRSN RRWAQENIAA MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS RSSHSSASFH SSTALLFPSS
201: SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRTPFTPTS
301: RSEYSWGCNN YYYSGYHPNY MANTESYKAK VRSQSAPKQR VEVSNETSGY KRSVQGQYYY YTAVEEESLD VGSAGYYGGG GGDSDRLNRN QSAKSRMHSS
401: FLV

Arabidopsis Description

IQD23At5g62070/mtg10_90 [Source:UniProtKB/TrEMBL;Acc:Q9FIT1]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.