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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plastid

Predictor Summary:
  • nucleus 2
  • plastid 2
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY00253 Canola plastid 81.89 83.76
CDX86928 Canola mitochondrion, plastid 81.89 83.76
Bra010055.1-P Field mustard plastid 81.64 81.23
CDY00251 Canola plastid 81.89 80.29
AT5G07240.2 Thale cress plastid 66.75 60.18
AT3G51380.1 Thale cress mitochondrion 10.92 42.72
KRG91452 Soybean cytosol 47.39 41.89
KRH09113 Soybean cytosol 49.38 41.72
GSMUA_Achr8P11920_001 Banana cytosol 36.97 41.5
KRH35361 Soybean cytosol, mitochondrion 47.64 41.38
KRH38565 Soybean cytosol 49.13 41.08
GSMUA_Achr5P13660_001 Banana cytosol, mitochondrion 39.95 36.76
VIT_16s0100g00620.t01 Wine grape cytosol 29.28 35.44
GSMUA_Achr3P18210_001 Banana cytosol, mitochondrion 37.72 35.43
GSMUA_Achr5P20090_001 Banana cytosol, mitochondrion 39.7 34.86
Solyc03g026110.2.1 Tomato cytosol, mitochondrion 39.7 32.92
EES12687 Sorghum cytosol, mitochondrion 37.97 32.76
Zm00001d002630_P002 Maize mitochondrion 36.97 32.6
Os04t0569900-01 Rice cytosol, mitochondrion 37.47 32.54
TraesCS2B01G418900.1 Wheat cytosol, mitochondrion 36.72 32.17
TraesCS2D01G398300.1 Wheat cytosol, mitochondrion 36.72 32.03
PGSC0003DMT400037043 Potato mitochondrion, nucleus 37.72 31.93
GSMUA_Achr11P... Banana cytosol, mitochondrion 33.5 31.91
Zm00001d026084_P001 Maize mitochondrion 38.46 31.25
HORVU0Hr1G005320.2 Barley cytosol 28.04 31.04
AT4G23060.1 Thale cress mitochondrion, nucleus 35.98 29.96
AT3G16490.1 Thale cress cytosol 28.78 29.82
AT1G51960.1 Thale cress cytosol, mitochondrion 24.07 27.64
AT4G29150.1 Thale cress mitochondrion 26.05 26.32
AT5G03960.2 Thale cress cytosol, mitochondrion 22.08 22.03
AT4G14750.3 Thale cress cytosol 23.08 20.22
AT5G13460.1 Thale cress nucleus 17.62 16.03
AT1G74690.1 Thale cress cytosol 19.85 13.63
AT1G18840.1 Thale cress cytosol 18.86 13.29
AT1G14380.1 Thale cress cytosol 17.12 10.39
AT2G02790.1 Thale cress cytosol 16.38 10.38
AT1G19870.1 Thale cress nucleus 18.86 9.57
Protein Annotations
Gene3D:1.20.5.190MapMan:35.2EntrezGene:836327UniProt:A0A178UJA3ProteinID:AED97558.1ArrayExpress:AT5G62070
EnsemblPlantsGene:AT5G62070RefSeq:AT5G62070TAIR:AT5G62070RefSeq:AT5G62070-TAIR-GEnsemblPlants:AT5G62070.1TAIR:AT5G62070.1
EMBL:AY050323EMBL:AY143917ProteinID:BAB10169.1InterPro:DUF4005GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR000048Symbol:IQD23InterPro:IQ_motif_EF-hand-BSRefSeq:NP_201013.1ProteinID:OAO93675.1
InterPro:P-loop_NTPasePFAM:PF00612PFAM:PF13178PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS50096PANTHER:PTHR32295PANTHER:PTHR32295:SF11
UniProt:Q9FIT1SMART:SM00015SUPFAM:SSF52540UniParc:UPI00000ABED4SEG:seg:
Description
IQD23At5g62070/mtg10_90 [Source:UniProtKB/TrEMBL;Acc:Q9FIT1]
Coordinates
chr5:-:24929859..24932686
Molecular Weight (calculated)
44273.5 Da
IEP (calculated)
11.036
GRAVY (calculated)
-0.788
Length
403 amino acids
Sequence
(BLAST)
001: MGFFGRLFGS KKKSDKAASS RDKRRWSFTT RSSNSSKRAP AVTSASVVEQ NGLDADKHAI AVAAATAAVA EAALTAAHAA AEVVRLTSGN GGRNVGGGGN
101: SSVFQIGRSN RRWAQENIAA MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS RSSHSSASFH SSTALLFPSS
201: SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRTPFTPTS
301: RSEYSWGCNN YYYSGYHPNY MANTESYKAK VRSQSAPKQR VEVSNETSGY KRSVQGQYYY YTAVEEESLD VGSAGYYGGG GGDSDRLNRN QSAKSRMHSS
401: FLV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.