Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26720 | Canola | cytosol, mitochondrion | 77.45 | 78.55 |
| CDY19251 | Canola | cytosol, mitochondrion | 76.75 | 78.39 |
| Bra025690.1-P | Field mustard | cytosol, mitochondrion | 77.27 | 78.37 |
| CDX83805 | Canola | cytosol, mitochondrion | 74.13 | 75.99 |
| AT1G74690.1 | Thale cress | cytosol | 65.73 | 64.05 |
| CDX96693 | Canola | nucleus | 74.13 | 63.0 |
| Bra016536.1-P | Field mustard | nucleus | 74.13 | 63.0 |
| PGSC0003DMT400003322 | Potato | cytosol | 37.06 | 37.99 |
| Solyc02g087760.2.1 | Tomato | nucleus | 36.71 | 37.77 |
| AT3G51380.1 | Thale cress | mitochondrion | 6.47 | 35.92 |
| AT2G02790.1 | Thale cress | cytosol | 30.77 | 27.67 |
| AT1G14380.1 | Thale cress | cytosol | 29.72 | 25.6 |
| AT1G51960.1 | Thale cress | cytosol, mitochondrion | 13.29 | 21.65 |
| AT3G16490.1 | Thale cress | cytosol | 14.51 | 21.34 |
| AT5G62070.1 | Thale cress | cytosol, plastid | 13.29 | 18.86 |
| AT4G29150.1 | Thale cress | mitochondrion | 13.11 | 18.8 |
| AT5G13460.1 | Thale cress | nucleus | 14.51 | 18.74 |
| AT4G14750.3 | Thale cress | cytosol | 14.16 | 17.61 |
| AT5G07240.2 | Thale cress | plastid | 13.46 | 17.23 |
| AT4G23060.1 | Thale cress | mitochondrion, nucleus | 13.99 | 16.53 |
| AT5G03960.2 | Thale cress | cytosol, mitochondrion | 10.84 | 15.35 |
| AT1G19870.1 | Thale cress | nucleus | 18.88 | 13.6 |
Protein Annotations
| MapMan:35.1 | EntrezGene:838465 | ProteinID:AEE29769.1 | ProteinID:AEE29770.1 | ProteinID:ANM60334.1 | ArrayExpress:AT1G18840 |
| EnsemblPlantsGene:AT1G18840 | RefSeq:AT1G18840 | TAIR:AT1G18840 | RefSeq:AT1G18840-TAIR-G | EnsemblPlants:AT1G18840.1 | TAIR:AT1G18840.1 |
| Unigene:At.41775 | EMBL:BT022035 | InterPro:DUF4005 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0008150 |
| InterPro:IPR000048 | Symbol:IQD30 | InterPro:IQ_motif_EF-hand-BS | RefSeq:NP_001031067.1 | RefSeq:NP_001322630.1 | RefSeq:NP_173318.2 |
| InterPro:P-loop_NTPase | PFAM:PF00612 | PFAM:PF13178 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50096 | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF14 |
| UniProt:Q501D2 | SMART:SM00015 | SUPFAM:SSF52540 | UniParc:UPI0000196D88 | SEG:seg | : |
Description
IQD30At1g18840 [Source:UniProtKB/TrEMBL;Acc:Q501D2]
Coordinates
chr1:-:6500814..6504567
Molecular Weight (calculated)
62735.8 Da
IEP (calculated)
9.753
GRAVY (calculated)
-0.731
Length
572 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKPARWLKS VLLGKKPSKS SGSKDKERIV NGKEVVVISK IEESDVVSDL SSIGNAAVYT SGIVETQNLK HEDVSDDEIQ VSEVQPTDSQ DVASVPDDSL
101: SESEKIQQEI AAVTVQAAYR GYLARRAFKI LKGIIRLQAL IRGHMVRRQA VSTLCCVMGI VRLQALARGR EIRHSDIGVE VQRKCHLHHQ PLENKANSVV
201: DTHSYLGINK LTGNAFAQKL LASSPNVLPL SLDNDSSNSI WLENWSASCF WKPVPQPKKA SLRKSQKKFA SNPQIVEAEF ARPKKSVRKV PSSNLDNSSV
301: AQTSSELEKP KRSFRKVSTS QSVEPLPSMD NPQVDLEKVK RGLRKVHNPV VENSIQPQLV PQIAVEKPNG SLEESVNAFD EEKEDEVAET VVQQPEELIQ
401: THTPLGTNES LDSTLVNQIE ESEENVMAEE KEDVKEERTP KQNHKENSAG KENQKSGKKA SSVTATQTAE FQESGNGNQT SSPGIPSYMQ ATKSAKAKLR
501: LQGSSSPRQL GTTEKASRRY SLPSSGNSAK ITSHSPKTRV SNSSGKSGNK TEKTLLSSRE GNGKATPVEW KR
101: SESEKIQQEI AAVTVQAAYR GYLARRAFKI LKGIIRLQAL IRGHMVRRQA VSTLCCVMGI VRLQALARGR EIRHSDIGVE VQRKCHLHHQ PLENKANSVV
201: DTHSYLGINK LTGNAFAQKL LASSPNVLPL SLDNDSSNSI WLENWSASCF WKPVPQPKKA SLRKSQKKFA SNPQIVEAEF ARPKKSVRKV PSSNLDNSSV
301: AQTSSELEKP KRSFRKVSTS QSVEPLPSMD NPQVDLEKVK RGLRKVHNPV VENSIQPQLV PQIAVEKPNG SLEESVNAFD EEKEDEVAET VVQQPEELIQ
401: THTPLGTNES LDSTLVNQIE ESEENVMAEE KEDVKEERTP KQNHKENSAG KENQKSGKKA SSVTATQTAE FQESGNGNQT SSPGIPSYMQ ATKSAKAKLR
501: LQGSSSPRQL GTTEKASRRY SLPSSGNSAK ITSHSPKTRV SNSSGKSGNK TEKTLLSSRE GNGKATPVEW KR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.