Factsheet for Solyc02g087760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g083520.2.1
Solyc11g072270.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74690.1	Solyc03g083520.2.1	AT1G12310.1	21798944
AT1G74690.1	Solyc11g072270.1.1	AT1G12310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003322	Potato	cytosol	94.96	94.62
Bra008163.1-P	Field mustard	cytosol	35.97	38.76
AT1G18840.1	Thale cress	cytosol	37.77	36.71
AT1G74690.1	Thale cress	cytosol	38.49	36.46
CDY19251	Canola	cytosol, mitochondrion	36.51	36.25
Bra025690.1-P	Field mustard	cytosol, mitochondrion	36.69	36.17
CDY26720	Canola	cytosol, mitochondrion	36.69	36.17
Solyc05g007130.2.1	Tomato	cytosol, plastid	35.43	35.75
CDX83805	Canola	cytosol, mitochondrion	35.07	34.95
Solyc08g007920.1.1	Tomato	cytosol	12.95	30.77
Solyc08g007930.1.1	Tomato	cytosol	12.41	30.4
Bra016536.1-P	Field mustard	nucleus	35.61	29.42
CDX96693	Canola	nucleus	35.61	29.42
Solyc09g082560.2.1	Tomato	nucleus	19.06	22.7
Solyc12g008520.1.1	Tomato	cytosol	15.83	21.52
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	18.7	21.4
Solyc08g080470.2.1	Tomato	plastid	19.06	21.24
Solyc06g066430.2.1	Tomato	nucleus	14.93	21.17
Solyc01g088250.2.1	Tomato	cytosol, plastid	16.73	20.31
Solyc04g016480.2.1	Tomato	mitochondrion, nucleus	14.57	19.76
Solyc10g079240.1.1	Tomato	mitochondrion, nucleus	14.39	19.0
Solyc04g081210.2.1	Tomato	nucleus	21.04	13.57

Protein Annotations

EnsemblPlants:Solyc02g087760.2.1	EnsemblPlantsGene:Solyc02g087760.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:DUF4005
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR32295	PANTHER:PTHR32295:SF42	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	SMART:SM00015	UniParc:UPI0002768121	UniProt:K4BBT2	MapMan:35.1

Description

No Description!

Coordinates

chr2:+:50065398..50070646

Molecular Weight (calculated)

61090.0 Da

IEP (calculated)

10.355

GRAVY (calculated)

-0.788

Length

556 amino acids

Sequence
(BLAST)

001: MGKKSPAKWI KAVLFGKKSS KSHLSKDASG EKISSAKAPV GDLSIDSPSL DLPVQNFDNG GDQAGLEKGT STDFACETAS LSSATHDIEP PVNGTTSSDD
101: AELKRQEHAA TIAQAAFRGY LARRAFRALK GIIRLQALIR GHLVRRQAVA TLRCMQAIVR IQALARGRRS RLLDPGHHLL RKYSFEELKY PEQRQAKLTV
201: YAFPRKLLVA VPTAMPLSLQ YDEGEPNSAW QWLERWSLSR FWEPLPQPKK VVGAKSLKKQ GNKPSVETEA VRPKRSVKKV LTASNGDAHG VSSSEPEKAK
301: RNPRKFSNHH IEPVQDQPQN ELEKVKRNLR KVSAALATSS ERSETEIEKA QQTPNLAQAQ ATVSKSSAPD VVEQMMVNSC EKTSDSAPEI EKLVESEAPL
401: PVAVDEPTDV LHDHPTTEQQ QPEDVNNTAN SPVVNEEISS MDDQTTKERI RRRKSLPTKQ DNSENISQNT PSVPSYMAAT QSAKAKLKAQ GSPKVSDDGA
501: ENGFVRRHSL PSSANGKFNS LSPRIQKPGQ ANGKSGNKTR PISSSKDEKV LPGWRR

Best Arabidopsis Sequence Match ( AT1G74690.1 )
(BLAST)

001: MGKSTKWLKN VLLGKKTSKS SGSKDKERVV SGKEVLVTSK VEESDVVSDL PSFEVAETNT VDRSGGMLET QNVGPEEISD DEIELPEGKS TDSQNVAPVQ
101: DHSLSDAERI QREIAATSVQ AAFRGYLARR AFWALKGIIR LQALIRGHLV RRQAVATLFS VMGIVRLQAF ARGREIRKSD IGVQVYRKCR LQLLQGNKLA
201: NPTDAYLGIK KLTANAFAQK LLASSPKVLP VHAYDTSNPN SNLIWLENWS ASCFWKPVPQ PKKTISRKPQ NRLLVEAESA KPKKSVRKVP ASNFESSSVQ
301: TSFEFEKPKR SFRKVSSQSI EPPAVEDPQI ELEKVKRSLR KVHNPVVESS IQPQRSPRKE VEKPKLGVEK TRESSYPLVH ETAEEPVNVC DEKKKQEISE
401: QPEEEVHALE MEVHTPGPLE TNEALDSSLV NQIDSNEKAM VEEKPSMEKD TKEEKTPKPN NKENSAGKEN QKSRKKGSAT SKTEREESNG HHETSPSIPS
501: YMQATKSAKA KLRLQGSPKS AEQDGTEKAT VPRRHSLPSP GNGRITSHSP RTTRLANSGD KTGNKKEKPL LSSREGNAKT TPAERKR

Arabidopsis Description

IQD31Protein IQ-DOMAIN 31 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4D8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.