Factsheet for Solyc03g026110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62070.1	Solyc02g086840.2.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037043	Potato	mitochondrion, nucleus	93.42	95.38
GSMUA_Achr8P11920_001	Banana	cytosol	34.57	46.8
Solyc08g007920.1.1	Tomato	cytosol	22.43	46.58
Bra005929.1-P	Field mustard	plastid	32.1	45.48
CDX78285	Canola	plastid	32.1	45.35
CDX98994	Canola	mitochondrion	32.92	45.2
Solyc08g007930.1.1	Tomato	cytosol	20.99	44.93
CDX70019	Canola	cytosol, mitochondrion	32.72	44.92
Bra009281.1-P	Field mustard	mitochondrion	32.3	44.35
KRH35361	Soybean	cytosol, mitochondrion	41.56	43.53
KRG91452	Soybean	cytosol	40.74	43.42
KRH09113	Soybean	cytosol	42.59	43.4
KRH38565	Soybean	cytosol	42.59	42.95
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	38.89	41.18
CDY00253	Canola	plastid	33.33	41.12
EES12687	Sorghum	cytosol, mitochondrion	39.3	40.9
CDX86928	Canola	mitochondrion, plastid	33.13	40.86
CDX81042	Canola	plastid	32.1	40.31
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	38.07	40.22
Zm00001d002630_P002	Maize	mitochondrion	37.65	40.04
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	38.07	40.04
Bra010055.1-P	Field mustard	plastid	33.33	40.0
AT5G62070.1	Thale cress	cytosol, plastid	32.92	39.7
Os04t0569900-01	Rice	cytosol, mitochondrion	37.86	39.66
CDY00251	Canola	plastid	33.33	39.42
HORVU0Hr1G005320.2	Barley	cytosol	28.81	38.46
VIT_16s0100g00620.t01	Wine grape	cytosol	26.13	38.14
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	33.54	38.0
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	34.16	37.9
Solyc08g080470.2.1	Tomato	plastid	38.68	37.68
Zm00001d026084_P001	Maize	mitochondrion	37.45	36.69
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	31.69	36.41
AT5G07240.2	Thale cress	plastid	32.92	35.79
Solyc06g066430.2.1	Tomato	nucleus	25.51	31.63
Solyc12g008520.1.1	Tomato	cytosol	24.49	29.1
Solyc09g082560.2.1	Tomato	nucleus	25.72	26.77
Solyc04g016480.2.1	Tomato	mitochondrion, nucleus	20.78	24.63
Solyc10g079240.1.1	Tomato	mitochondrion, nucleus	19.34	22.33
Solyc01g088250.2.1	Tomato	cytosol, plastid	17.9	19.0
Solyc02g087760.2.1	Tomato	nucleus	21.4	18.7
Solyc05g007130.2.1	Tomato	cytosol, plastid	16.46	14.52
Solyc04g081210.2.1	Tomato	nucleus	19.34	10.9

Protein Annotations

EnsemblPlants:Solyc03g026110.2.1	EnsemblPlantsGene:Solyc03g026110.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:DUF4005
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF11	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	SEG:seg	UniParc:UPI0002769094	UniProt:K4BF84	MapMan:35.2	:

Description

No Description!

Coordinates

chr3:-:3519385..3523165

Molecular Weight (calculated)

53293.3 Da

IEP (calculated)

10.764

GRAVY (calculated)

-0.870

Length

486 amino acids

Sequence
(BLAST)

001: MGKASRWLRS LLGSKKSPSE SSPPAKEGKN SKWGLRKSSN GTGRTTGAEI AYGNEDPPAS PYAEALDANK HAIAVAAATA AVAEAALAAA QAAAEVVRLT
101: SGKRSTSAYG SSNTERRREW AAVKIQSEFR AYLARRALRA LKGLVKLQAL VRGRIVRKQS ADMLRRMQAM ARIQARASAN RNVTSDPSHS SIRASRFEHP
201: GIATPRKYDP QQYSFNCKYH GPNLKKSGSK LKLHESFGQD RSHLASQYIH HWMEECAKNG YGDTSLKKNG GDHDESTDKI LEIDTWKPSL HPKPSEKKSH
301: NSRYSSWNDN AHGTRTVNSM SKLLGNHMKP NPSISSGEVS SLRSLTFCQD TDQPAAWTVE RSPGVHSTLS RPGSSSRRGP SLSRSDCSRS LFGDYLGHPN
401: YMSNTESYLA KLRSHSAPRQ RVQFEKIGST KYVDGLVDAD TNSEKSWRSL GNFMNKPKPG SGQSDRVGTP DHRSAVRSSS PFGPRQ

Best Arabidopsis Sequence Match ( AT4G23060.1 )
(BLAST)

001: MGKASRWFRS LFGVKKPDPG YPDLSVETPS RSTSSNLKRR WSFVKSKREK ESTPINQVPH TPSLPNSTPP PPSHHQSSPR RRRKQKPMWE DEGSEDSDKH
101: AIAVAAATAA VAEAAVAAAN AAAAVVRLTS TSGRSTRSPV KARFSDGFDD VVAHGSKFYG HGRDSCELAV IKIQSIFRGY LAKRALRALK GLVRLQAIVR
201: GHIERKRMSV HLRRMHALVR AQARVRATRV IVTPESSSSQ SNNTKSSHFQ NPGPPTPEKL EHSISSRSSK LAHSHLFKRN GSKASDNNRL YPAHRETFSA
301: TDEEEKILQI DRKHISSYTR RNRPDMFYSS HLILDNAGLS EPVFATPFSP SSSHEEITSQ FCTAENSPQL YSATSRSKRS AFTASSIAPS DCTKSCCDGD
401: HPSYMACTES SRAKARSASA PKSRPQLFYE RPSSKRFGFV DLPYCGDTKS GPQKGSALHT SFMNKAYPGS GRLDRLGMPI GYRY

Arabidopsis Description

IQD22Calmodulin binding protein IQD22 [Source:UniProtKB/TrEMBL;Acc:Q2NNE0]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.