Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g007930.1.1 | Tomato | cytosol | 91.03 | 93.83 |
| PGSC0003DMT400014796 | Potato | cytosol | 91.88 | 59.72 |
| Solyc08g080470.2.1 | Tomato | plastid | 59.4 | 27.86 |
| VIT_02s0025g04120.t01 | Wine grape | mitochondrion | 56.84 | 26.92 |
| KRH77498 | Soybean | cytosol, mitochondrion | 45.3 | 26.77 |
| GSMUA_Achr8P11920_001 | Banana | cytosol | 38.46 | 25.07 |
| GSMUA_Achr3P18210_001 | Banana | cytosol, mitochondrion | 44.02 | 24.01 |
| KRH03972 | Soybean | cytosol | 45.73 | 23.94 |
| TraesCS2B01G418900.1 | Wheat | cytosol, mitochondrion | 45.3 | 23.04 |
| TraesCS2D01G398300.1 | Wheat | cytosol, mitochondrion | 45.3 | 22.94 |
| KRH57246 | Soybean | cytosol | 43.59 | 22.92 |
| HORVU0Hr1G005320.2 | Barley | cytosol | 35.47 | 22.8 |
| Os04t0569900-01 | Rice | cytosol, mitochondrion | 44.87 | 22.63 |
| EES12687 | Sorghum | cytosol, mitochondrion | 44.87 | 22.48 |
| Solyc03g026110.2.1 | Tomato | cytosol, mitochondrion | 46.58 | 22.43 |
| GSMUA_Achr5P13660_001 | Banana | cytosol, mitochondrion | 41.88 | 22.37 |
| Zm00001d002630_P002 | Maize | mitochondrion | 43.59 | 22.32 |
| Solyc06g066430.2.1 | Tomato | nucleus | 37.18 | 22.19 |
| CDY41368 | Canola | mitochondrion, plastid | 39.74 | 22.14 |
| CDX76341 | Canola | mitochondrion, plastid | 39.74 | 22.14 |
| Bra020822.1-P | Field mustard | mitochondrion, plastid | 39.74 | 22.14 |
| GSMUA_Achr5P20090_001 | Banana | cytosol, mitochondrion | 43.16 | 22.0 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 39.32 | 21.75 |
| CDX98787 | Canola | mitochondrion | 26.5 | 20.95 |
| Zm00001d026084_P001 | Maize | mitochondrion | 43.16 | 20.36 |
| Solyc12g008520.1.1 | Tomato | cytosol | 35.47 | 20.29 |
| CDY41252 | Canola | cytosol, mitochondrion | 42.31 | 20.29 |
| CDX94150 | Canola | nucleus | 39.74 | 20.04 |
| AT4G23060.1 | Thale cress | mitochondrion, nucleus | 41.45 | 20.04 |
| CDY53133 | Canola | nucleus | 41.45 | 19.96 |
| Bra019337.1-P | Field mustard | nucleus | 40.17 | 19.96 |
| CDX98786 | Canola | nucleus | 40.17 | 19.79 |
| Bra013672.1-P | Field mustard | mitochondrion, nucleus | 41.88 | 19.76 |
| Solyc09g082560.2.1 | Tomato | nucleus | 35.9 | 17.99 |
| Solyc04g016480.2.1 | Tomato | mitochondrion, nucleus | 28.21 | 16.1 |
| Solyc10g079240.1.1 | Tomato | mitochondrion, nucleus | 27.78 | 15.44 |
| Solyc01g088250.2.1 | Tomato | cytosol, plastid | 28.63 | 14.63 |
| Solyc02g087760.2.1 | Tomato | nucleus | 30.77 | 12.95 |
| Solyc05g007130.2.1 | Tomato | cytosol, plastid | 23.5 | 9.98 |
| Solyc04g081210.2.1 | Tomato | nucleus | 26.92 | 7.31 |
Protein Annotations
| Gene3D:1.20.5.190 | MapMan:35.2 | InterPro:DUF4005 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | UniProt:K4CIS7 | InterPro:P-loop_NTPase | PFAM:PF00612 | PFAM:PF13178 |
| PFscan:PS50096 | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF13 | SMART:SM00015 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc08g007920.1 |
| EnsemblPlants:Solyc08g007920.1.1 | UniParc:UPI000276CA51 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr8:+:2425707..2427454
Molecular Weight (calculated)
26762.8 Da
IEP (calculated)
11.182
GRAVY (calculated)
-0.831
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKASKWFKA LLGFKKNESS ISSTNKKKWG DVKSYKDKDF QQHHEKSHYM NSRAGVDLAI YEVHSSLTTS SVIRTTTWNS EEWAAVVIQS YFRAYLSRRA
101: LRALKGLVKL QALVRGHIVR KQAADMLRRM QALIRAQSRA RLGRSMVFES PPFSTKSTQS IHHGPTTSSR CTRSRTGPFT PTKSSTRSYT SDEYSNNHPN
201: YMSYTEAAKA KTRSMSAPRL RSQYDKKYAR SNMQ
101: LRALKGLVKL QALVRGHIVR KQAADMLRRM QALIRAQSRA RLGRSMVFES PPFSTKSTQS IHHGPTTSSR CTRSRTGPFT PTKSSTRSYT SDEYSNNHPN
201: YMSYTEAAKA KTRSMSAPRL RSQYDKKYAR SNMQ
001: MYHTLASPFP IVSSFLFVLV KNKKNNKKNL NRRKFRQEFS SYNELSMGFF GRLFGSKKQE KATPNRRRWS FATRSSHPEN DSSSHSSKRR GDEDVLNGDK
101: HAIAVAAATA AVAEAALAAA RAAAEVVRLT NGGRNSSVKQ ISRSNRRWSQ EYKAAMKIQS AFRGYLARRA LRALKALVKL QALVKGHIVR KQTADMLRRM
201: QTLVRLQARA RASRSSHVSD SSHPPTLMIP SSPQSFHARC VSEAEYSKVI AMDHHHNNHR SPMGSSRLLD QWRTEESLWS APKYNEDDDK ILEVDTWKPH
301: FRESPRKRGS LVVPTSVENS PQLRSRTGSS SGGSRRKTPF TPARSEYEYY SGYHPNYMAN TESYKAKVRS QSAPRQRLQD LPSESGYKRS IQGQYYYYTP
401: AAERSFDQRS DNGIAGYRGV SDGLDRNQSD KSKMYTSFFS SNPLFFQ
101: HAIAVAAATA AVAEAALAAA RAAAEVVRLT NGGRNSSVKQ ISRSNRRWSQ EYKAAMKIQS AFRGYLARRA LRALKALVKL QALVKGHIVR KQTADMLRRM
201: QTLVRLQARA RASRSSHVSD SSHPPTLMIP SSPQSFHARC VSEAEYSKVI AMDHHHNNHR SPMGSSRLLD QWRTEESLWS APKYNEDDDK ILEVDTWKPH
301: FRESPRKRGS LVVPTSVENS PQLRSRTGSS SGGSRRKTPF TPARSEYEYY SGYHPNYMAN TESYKAKVRS QSAPRQRLQD LPSESGYKRS IQGQYYYYTP
401: AAERSFDQRS DNGIAGYRGV SDGLDRNQSD KSKMYTSFFS SNPLFFQ
Arabidopsis Description
IQD24IQ-domain 24 [Source:TAIR;Acc:AT5G07240]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.