Factsheet for PGSC0003DMT400014796

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007920.1.1	Tomato	cytosol	59.72	91.88
Solyc08g007930.1.1	Tomato	cytosol	57.5	91.19
PGSC0003DMT400007855	Potato	cytosol, plastid	55.83	40.2
VIT_02s0025g04120.t01	Wine grape	mitochondrion	53.06	38.66
KRH77498	Soybean	cytosol, mitochondrion	42.22	38.38
GSMUA_Achr8P11920_001	Banana	cytosol	34.17	34.26
KRH03972	Soybean	cytosol	42.22	34.0
CDX98787	Canola	mitochondrion	27.78	33.78
PGSC0003DMT400009431	Potato	mitochondrion	11.94	32.82
KRH57246	Soybean	cytosol	40.56	32.81
HORVU0Hr1G005320.2	Barley	cytosol	31.39	31.04
Bra020822.1-P	Field mustard	mitochondrion, plastid	35.56	30.48
CDY41368	Canola	mitochondrion, plastid	35.56	30.48
CDX76341	Canola	mitochondrion, plastid	35.56	30.48
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	37.78	29.63
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	35.0	29.37
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	37.5	29.35
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	37.5	29.22
CDX98786	Canola	nucleus	38.33	29.05
CDY41252	Canola	cytosol, mitochondrion	38.89	28.69
Os04t0569900-01	Rice	cytosol, mitochondrion	36.94	28.66
Bra019337.1-P	Field mustard	nucleus	37.5	28.66
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	34.72	28.54
Zm00001d002630_P002	Maize	mitochondrion	36.11	28.45
AT4G23060.1	Thale cress	mitochondrion, nucleus	38.06	28.31
EES12687	Sorghum	cytosol, mitochondrion	36.67	28.27
CDX94150	Canola	nucleus	36.39	28.23
CDY53133	Canola	nucleus	38.06	28.19
Bra013672.1-P	Field mustard	mitochondrion, nucleus	38.61	28.02
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	32.22	27.42
Zm00001d026084_P001	Maize	mitochondrion	36.94	26.81
PGSC0003DMT400037043	Potato	mitochondrion, nucleus	34.72	26.26
PGSC0003DMT400000953	Potato	cytosol	23.33	23.08
PGSC0003DMT400042595	Potato	nucleus	9.44	22.37
PGSC0003DMT400033127	Potato	cytosol, mitochondrion	21.94	19.51
PGSC0003DMT400017589	Potato	cytosol, plastid	20.83	17.44
PGSC0003DMT400003322	Potato	cytosol	25.28	16.31
PGSC0003DMT400016500	Potato	nucleus	11.11	15.04
PGSC0003DMT400045444	Potato	cytosol, plastid	19.17	12.41
PGSC0003DMT400021096	Potato	nucleus	6.94	11.31
PGSC0003DMT400009545	Potato	nucleus	21.39	8.87

Protein Annotations

EnsemblPlants:PGSC0003DMT400014796	EnsemblPlantsGene:PGSC0003DMG400005774	EntrezGene:102597104	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF13
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PGSC:PGSC0003DMG400005774	RefSeq:XP_006352283.1	SEG:seg
SMART:SM00015	UniParc:UPI00029545FE	UniProt:M1A4W3	MapMan:35.2	:	:

Description

Calmodulin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005774]

Coordinates

chr8:+:4751904..4754698

Molecular Weight (calculated)

40757.9 Da

IEP (calculated)

10.554

GRAVY (calculated)

-0.798

Length

360 amino acids

Sequence
(BLAST)

001: MGKASKWFKA LLGFKKNDSS SSSTSSTNKK KWSDVKSYKD KDFQHHHQHH DKSHYVNSRA GVDPTICEVH SSLTSSVIRT TTSVTPWSGE EWAAVVIQSH
101: FRAYLSRRAL RALKGLVKLQ ALVRGHIVRK QTADMLRRMQ ALIRAQSRAR LGRSMVFESP PFSAKSTQFI PHGPTTPDKF EQIIRARSMK NDQMFMLKRN
201: SSNHIGNANA KQRNLFHSSE FSLNSEQFCF SYDETCYSSI DNSPQLHSTA SSKCTRSRTG PFTPTKSSTR SYTSDEYSNN HPNYMSYTEA AKAKTRSMSA
301: PRLRSQYDKR YSRSNMQKGS NCYANFTSKG VCSGSDRLDK IGVPISGDLD EFGRGFCHIY

Best Arabidopsis Sequence Match ( AT4G23060.1 )
(BLAST)

001: MGKASRWFRS LFGVKKPDPG YPDLSVETPS RSTSSNLKRR WSFVKSKREK ESTPINQVPH TPSLPNSTPP PPSHHQSSPR RRRKQKPMWE DEGSEDSDKH
101: AIAVAAATAA VAEAAVAAAN AAAAVVRLTS TSGRSTRSPV KARFSDGFDD VVAHGSKFYG HGRDSCELAV IKIQSIFRGY LAKRALRALK GLVRLQAIVR
201: GHIERKRMSV HLRRMHALVR AQARVRATRV IVTPESSSSQ SNNTKSSHFQ NPGPPTPEKL EHSISSRSSK LAHSHLFKRN GSKASDNNRL YPAHRETFSA
301: TDEEEKILQI DRKHISSYTR RNRPDMFYSS HLILDNAGLS EPVFATPFSP SSSHEEITSQ FCTAENSPQL YSATSRSKRS AFTASSIAPS DCTKSCCDGD
401: HPSYMACTES SRAKARSASA PKSRPQLFYE RPSSKRFGFV DLPYCGDTKS GPQKGSALHT SFMNKAYPGS GRLDRLGMPI GYRY

Arabidopsis Description

IQD22Calmodulin binding protein IQD22 [Source:UniProtKB/TrEMBL;Acc:Q2NNE0]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.