Factsheet for PGSC0003DMT400000953

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g008520.1.1	Tomato	cytosol	91.21	81.17
VIT_11s0016g03030.t01	Wine grape	cytosol	60.44	50.57
KRH41488	Soybean	cytosol, mitochondrion	57.69	48.17
PGSC0003DMT400042595	Potato	nucleus	19.51	46.71
KRH60203	Soybean	cytosol, mitochondrion	46.15	46.67
KRH74242	Soybean	cytosol, mitochondrion	51.37	44.52
GSMUA_Achr6P14870_001	Banana	cytosol, mitochondrion	42.31	41.07
GSMUA_Achr3P17570_001	Banana	cytosol, mitochondrion	41.21	37.13
TraesCS1B01G142100.1	Wheat	cytosol	43.96	35.24
GSMUA_Achr10P...	Banana	cytosol	42.58	35.15
Os05t0187500-01	Rice	cytosol	45.05	34.89
AT4G29150.1	Thale cress	mitochondrion	38.19	34.84
TraesCS1A01G122900.1	Wheat	cytosol, plastid	43.41	34.8
TraesCS1D01G123800.1	Wheat	cytosol	43.41	34.8
Os01t0190500-01	Rice	cytosol, mitochondrion	44.23	34.62
GSMUA_Achr8P20170_001	Banana	cytosol, mitochondrion	37.36	34.0
GSMUA_Achr5P06520_001	Banana	cytosol, mitochondrion	37.91	33.99
GSMUA_AchrUn_...	Banana	cytosol	35.16	33.77
KRH48992	Soybean	endoplasmic reticulum	31.32	33.73
CDY47784	Canola	mitochondrion	35.71	33.51
Bra024161.1-P	Field mustard	mitochondrion	35.71	33.51
TraesCS3D01G109900.1	Wheat	cytosol, mitochondrion	42.31	33.41
CDY30233	Canola	mitochondrion	35.44	33.25
Zm00001d037688_P001	Maize	mitochondrion	42.03	33.12
TraesCS3B01G127100.1	Wheat	cytosol	42.03	33.05
TraesCS3A01G108100.1	Wheat	cytosol, mitochondrion	41.76	32.55
GSMUA_Achr7P13670_001	Banana	cytosol, mitochondrion	33.24	32.1
EES02320	Sorghum	mitochondrion	42.03	31.88
Zm00001d010366_P001	Maize	cytosol, mitochondrion	40.93	31.77
KXG21487	Sorghum	cytosol, mitochondrion	42.58	31.44
Zm00001d039510_P001	Maize	cytosol, mitochondrion	40.66	30.77
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	31.04	30.62
HORVU1Hr1G028250.6	Barley	mitochondrion	43.68	30.17
Zm00001d008819_P001	Maize	mitochondrion	37.64	29.4
HORVU3Hr1G019630.3	Barley	endoplasmic reticulum, plastid	42.03	26.7
PGSC0003DMT400014796	Potato	cytosol	23.08	23.33
PGSC0003DMT400009431	Potato	mitochondrion	8.24	22.9
PGSC0003DMT400007855	Potato	cytosol, plastid	29.95	21.8
PGSC0003DMT400016500	Potato	nucleus	15.66	21.43
PGSC0003DMT400033127	Potato	cytosol, mitochondrion	21.43	19.26
PGSC0003DMT400037043	Potato	mitochondrion, nucleus	24.73	18.91
PGSC0003DMT400017589	Potato	cytosol, plastid	20.05	16.98
PGSC0003DMT400003322	Potato	cytosol	21.7	14.16
PGSC0003DMT400045444	Potato	cytosol, plastid	20.33	13.31
PGSC0003DMT400021096	Potato	nucleus	7.69	12.67
PGSC0003DMT400009545	Potato	nucleus	20.33	8.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400000953	EnsemblPlantsGene:PGSC0003DMG400000357	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:DUF4005
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF22	PFAM:PF13178	PFscan:PS50096
PGSC:PGSC0003DMG400000357	SEG:seg	UniParc:UPI0002958F16	UniProt:M0ZHM8	MapMan:35.2	:

Description

IQ-domain 26 [Source:PGSC_GENE;Acc:PGSC0003DMG400000357]

Coordinates

chr12:-:4022918..4026121

Molecular Weight (calculated)

40723.3 Da

IEP (calculated)

10.590

GRAVY (calculated)

-0.757

Length

364 amino acids

Sequence
(BLAST)

001: MGKAIKWLKG LFGIKKLQID EKGKIGTTCF GHSGRDTTAV AVAAVSDRLC HNPTTIPPNI TPAEAAWLSS FYGDESDKEQ SKHAIAARKA LRALKGLVKL
101: QALVRGYLVR RQANATLYSM QALMRAQASV RAQKNKGGFF INQQNSQFQP RKSLEKFEES RSGSTKQMPS RRLSSSFEAN NINEESAKIV EMDTGRPKTR
201: SRRTNTWASN PCDDPFEQVL PSWASDWAQQ PVGTAQSTPR FANSCGSNTP TAKSVCVESH YFRNNYYDTN NNYYPNYMAK TQSFKAKLRS HSAPKQRPEL
301: GPKVKKMSLN EMMESRVSLS GAKMQRSCSQ AQEKISINFK NVVMSKLGNS SEFTTRVQEG KRDY

Best Arabidopsis Sequence Match ( AT3G16490.1 )
(BLAST)

001: MGRAARWFKG IFGMKKSKEK ENCVSGDVGG EAGGSNIHRK VLQADSVWLR TYLAETDKEQ NKHAIAVAAA TAAAADAAVA AAQAAVAVVR LTSNGRSGGY
101: SGNAMERWAA VKIQSVFKGY LARKALRALK GLVKLQALVR GYLVRKRAAE TLHSMQALIR AQTSVRSQRI NRNNMFHPRH SLERLDDSRS EIHSKRISIS
201: VEKQSNHNNN AYDETSPKIV EIDTYKTKSR SKRMNVAVSE CGDDFIYQAK DFEWSFPGEK CKFPTAQNTP RFSSSMANNN YYYTPPSPAK SVCRDACFRP
301: SYPGLMTPSY MANTQSFKAK VRSHSAPRQR PDRKRLSLDE IMAARSSVSG VRMVQPQPQP QTQTQQQKRS PCSYDHQFRQ NETDFRFYN

Arabidopsis Description

IQD26At3g16490 [Source:UniProtKB/TrEMBL;Acc:Q9LK76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.