Factsheet for PGSC0003DMT400021096

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079240.1.1	Tomato	mitochondrion, nucleus	94.12	49.41
PGSC0003DMT400033127	Potato	cytosol, mitochondrion	58.82	32.1
VIT_08s0007g05960.t01	Wine grape	cytosol	38.91	20.24
KRH33197	Soybean	cytosol, mitochondrion	31.67	17.95
VIT_08s0007g05980.t01	Wine grape	cytosol	35.29	17.26
PGSC0003DMT400042595	Potato	nucleus	11.31	16.45
Bra009498.1-P	Field mustard	cytosol, mitochondrion	26.7	15.45
Bra028807.1-P	Field mustard	mitochondrion	25.79	15.0
AT5G03960.2	Thale cress	cytosol, mitochondrion	26.7	14.6
PGSC0003DMT400017589	Potato	cytosol, plastid	24.89	12.79
CDY41417	Canola	mitochondrion	16.29	12.04
PGSC0003DMT400016500	Potato	nucleus	14.03	11.65
CDY72577	Canola	cytosol, mitochondrion	14.03	10.69
CDX70272	Canola	cytosol, mitochondrion	14.03	10.58
CDY41423	Canola	cytosol, mitochondrion	14.03	10.58
GSMUA_Achr3P17450_001	Banana	nucleus	19.0	9.35
CDY14162	Canola	endoplasmic reticulum	13.57	8.96
CDY04907	Canola	endoplasmic reticulum	13.57	8.96
TraesCS5B01G160400.1	Wheat	cytosol	18.1	8.4
TraesCS5A01G163000.1	Wheat	nucleus	18.1	8.4
TraesCS5D01G168000.2	Wheat	nucleus	18.1	8.33
PGSC0003DMT400003322	Potato	cytosol	20.81	8.24
Os03t0355700-00	Rice	cytosol	16.74	8.2
PGSC0003DMT400000953	Potato	cytosol	12.67	7.69
EER94844	Sorghum	cytosol	17.19	7.62
PGSC0003DMT400007855	Potato	cytosol, plastid	16.29	7.2
HORVU5Hr1G050840.5	Barley	cytosol, plastid	18.1	7.19
Zm00001d029197_P001	Maize	nucleus	15.38	7.14
PGSC0003DMT400014796	Potato	cytosol	11.31	6.94
PGSC0003DMT400037043	Potato	mitochondrion, nucleus	13.12	6.09
PGSC0003DMT400045444	Potato	cytosol, plastid	13.12	5.22
PGSC0003DMT400009545	Potato	nucleus	18.55	4.72
PGSC0003DMT400009431	Potato	mitochondrion	0.45	0.76

Protein Annotations

EnsemblPlants:PGSC0003DMT400021096	EnsemblPlantsGene:PGSC0003DMG400008172	InterPro:DUF4005	PANTHER:PTHR32295	PANTHER:PTHR32295:SF41	PFAM:PF13178
PGSC:PGSC0003DMG400008172	UniParc:UPI0002964E2D	UniProt:M1AEM1	MapMan:35.2	:	:

Description

Calmodulin binding protein SUN [Source:PGSC_GENE;Acc:PGSC0003DMG400008172]

Coordinates

chr10:-:58517456..58520217

Molecular Weight (calculated)

25688.5 Da

IEP (calculated)

10.647

GRAVY (calculated)

-1.019

Length

221 amino acids

Sequence
(BLAST)

001: MKAKELKLKC KSLRTWNFNL ASEQDSEALS SRREEAIDKR EHLMKYSFSH RERRNDQTLR DLLNRKQNRR SYRIDQLAEL EAPRKAGLFE KLRSFTDSNV
101: PLADMNGMTQ LQMRKMHRAD CIEDLHSPSS LPRRSFSNAK RKSNVDDNSL PSSPIFPTYM AATESAKAKT RSMSTPKQHL RLHEILSGQH SPYNLKISSW
201: RLSNGEMYDS ARTSRTSSSY M

Best Arabidopsis Sequence Match ( AT5G03960.1 )
(BLAST)

001: MAKRRSWFGW MKRLFICEAK ARAEKPRRLR WVFKRLKLRP QLATCGQETR TLNEATQDQR KHAMNVAIAT AAAAEAAVAA AKAAAEVVRM AGNAFTSQHF
101: VKKLAPNVAA IKIQSAFRAS LARKALRALK ALVRLQAIVR GRAVRRKVSA LLKSSHSNKA STSNIIQRQT ERKHWSNTKS EIKEELQVSN HSLCNSKVKC
201: NGWDSSALTK EDIKAIWLRK QEGVIKRDRM LKYSRSQRER RSPHMLVESL YAKDMGMRSC RLEHWGESKS AKSINSFLIP SEMLVPTKVK LRSLQRQDSG
301: DGQDSPFSFP RRSFSRLEQS ILEDESWFQR SNGFQPYMSV TESAREKMRS LSTPRQRVGI MDSLFDNYKK DGDKVSLWST FVCENSKINN AKKSSLTTYQ
401: HNC

Arabidopsis Description

IQD12IQ-domain 12 [Source:TAIR;Acc:AT5G03960]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.