CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41423	Canola	cytosol, mitochondrion	94.88	94.88
Bra009498.1-P	Field mustard	cytosol, mitochondrion	98.98	75.92
CDY04907	Canola	endoplasmic reticulum	82.59	72.24
CDY14162	Canola	endoplasmic reticulum	82.59	72.24
CDY72577	Canola	cytosol, mitochondrion	67.92	68.62
CDY41417	Canola	mitochondrion	68.94	67.56
AT5G03960.2	Thale cress	cytosol, mitochondrion	79.86	57.92
KRH33197	Soybean	cytosol, mitochondrion	46.42	34.87
VIT_08s0007g05960.t01	Wine grape	cytosol	46.76	32.24
PGSC0003DMT400033127	Potato	cytosol, mitochondrion	43.34	31.36
Solyc04g016480.2.1	Tomato	mitochondrion, nucleus	43.0	30.73
CDX90650	Canola	mitochondrion	10.58	30.1
CDY29016	Canola	mitochondrion	10.24	29.13
VIT_08s0007g05980.t01	Wine grape	cytosol	43.69	28.32
Solyc10g079240.1.1	Tomato	mitochondrion, nucleus	37.88	26.37
CDY29768	Canola	cytosol	14.68	25.75
GSMUA_Achr3P17450_001	Banana	nucleus	36.52	23.83
CDY46537	Canola	cytosol, mitochondrion	23.21	23.45
CDX73724	Canola	mitochondrion	10.24	23.08
CDY53440	Canola	mitochondrion	22.53	22.76
CDX91120	Canola	nucleus	27.99	21.87
CDX78285	Canola	plastid	24.91	21.22
CDX70019	Canola	cytosol, mitochondrion	25.26	20.9
CDX98994	Canola	mitochondrion	25.26	20.9
TraesCS5A01G163000.1	Wheat	nucleus	33.79	20.8
TraesCS5B01G160400.1	Wheat	cytosol	33.79	20.8
CDX85648	Canola	nucleus	27.99	20.76
CDY45643	Canola	cytosol	22.87	20.55
TraesCS5D01G168000.2	Wheat	nucleus	33.45	20.42
CDX78003	Canola	mitochondrion	10.58	20.39
Zm00001d029197_P001	Maize	nucleus	33.11	20.38
CDX70505	Canola	nucleus	30.72	20.18
CDY43103	Canola	cytosol	25.26	20.11
CDX86928	Canola	mitochondrion, plastid	26.96	20.05
CDY00253	Canola	plastid	26.96	20.05
EER94844	Sorghum	cytosol	33.79	19.84
CDX82400	Canola	cytosol	25.26	19.84
Os03t0355700-00	Rice	cytosol	30.38	19.73
CDX78523	Canola	nucleus	30.03	19.73
CDX75883	Canola	cytosol	24.91	19.47
CDX92076	Canola	cytosol	25.6	19.38
CDY00251	Canola	plastid	26.96	19.22
CDX81042	Canola	plastid	25.26	19.12
CDY67178	Canola	cytosol, mitochondrion	25.26	19.07
CDY68636	Canola	cytosol	25.26	19.02
CDY47784	Canola	mitochondrion	24.91	18.81
CDY30233	Canola	mitochondrion	24.91	18.81
CDY41368	Canola	mitochondrion, plastid	24.91	17.38
HORVU5Hr1G050840.5	Barley	cytosol, plastid	32.42	17.09
CDY41252	Canola	cytosol, mitochondrion	27.65	16.6
CDY53133	Canola	nucleus	27.3	16.46
CDX94150	Canola	nucleus	25.94	16.38
CDX76341	Canola	mitochondrion, plastid	23.21	16.19
CDX98786	Canola	nucleus	24.57	15.16
CDY50677	Canola	nucleus	18.09	14.4
CDY36861	Canola	nucleus	18.09	14.17
PGSC0003DMT400021096	Potato	nucleus	10.58	14.03
CDY64325	Canola	cytosol	17.06	13.4
CDX98787	Canola	mitochondrion	11.6	11.49
CDY26720	Canola	cytosol, mitochondrion	17.06	8.87
CDY19251	Canola	cytosol, mitochondrion	16.72	8.75
CDX83805	Canola	cytosol, mitochondrion	15.7	8.24
CDY49085	Canola	cytosol	16.38	7.83
CDY39317	Canola	cytosol	16.04	7.74
CDY41676	Canola	cytosol, plastid	13.99	7.13
CDY03037	Canola	cytosol	13.65	6.92
CDY67405	Canola	cytosol	13.65	6.91
CDX96693	Canola	nucleus	15.7	6.84
CDY45197	Canola	nucleus, plastid	12.97	6.52
CDY44186	Canola	nucleus, plastid	15.7	6.29
CDY04138	Canola	cytosol, plastid	11.95	6.24
CDY04137	Canola	cytosol, plastid	11.95	6.22
CDY29389	Canola	nucleus, plastid	15.36	6.02
CDX83739	Canola	nucleus	15.02	5.95
CDY17427	Canola	cytosol, plastid	11.26	5.82
CDY62588	Canola	nucleus	14.68	5.8
CDX75112	Canola	cytosol	2.05	4.32

Protein Annotations

EnsemblPlants:CDX70272	EnsemblPlantsGene:GSBRNA2T00136415001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF41	PFAM:PF00612	PFscan:PS50096
ProteinID:CDX70272	ProteinID:CDX70272.1	SEG:seg	UniParc:UPI0004EF1223	MapMan:35.2	:

Description

BnaA10g26210D

Coordinates

chrLK031790:+:3867042..3868512

Molecular Weight (calculated)

33527.8 Da

IEP (calculated)

11.625

GRAVY (calculated)

-0.667

Length

293 amino acids

Sequence
(BLAST)

001: MAKRRSWFGW IKRLFICEAK AKSEKPRRLR WVFRRLKLRH QIATPAQETR TLNKATEDQR KHAMNVAIAT AAAAEAAVAA AKAAAEVVRM AENAFTSQHF
101: VKKSSDPNLA AIKIQSAFRA YLARKALRAL KALVRLQAIV RGRAVRRKVS SNKASTSNFI QRKHLSKTKT EIKEELKIPK RSMCNGQNSW DSSALTKEDI
201: KAIWLRKQEG AVKRERMLKY SRSHRERRSP HMLLESLSTP RQRAAVMESW LDENKKDGDK VSLWSSFVSE ENSKMSSSKK SSLATNKHLL LKY

Best Arabidopsis Sequence Match ( AT5G03960.1 )
(BLAST)

001: MAKRRSWFGW MKRLFICEAK ARAEKPRRLR WVFKRLKLRP QLATCGQETR TLNEATQDQR KHAMNVAIAT AAAAEAAVAA AKAAAEVVRM AGNAFTSQHF
101: VKKLAPNVAA IKIQSAFRAS LARKALRALK ALVRLQAIVR GRAVRRKVSA LLKSSHSNKA STSNIIQRQT ERKHWSNTKS EIKEELQVSN HSLCNSKVKC
201: NGWDSSALTK EDIKAIWLRK QEGVIKRDRM LKYSRSQRER RSPHMLVESL YAKDMGMRSC RLEHWGESKS AKSINSFLIP SEMLVPTKVK LRSLQRQDSG
301: DGQDSPFSFP RRSFSRLEQS ILEDESWFQR SNGFQPYMSV TESAREKMRS LSTPRQRVGI MDSLFDNYKK DGDKVSLWST FVCENSKINN AKKSSLTTYQ
401: HNC

Arabidopsis Description

IQD12IQ-domain 12 [Source:TAIR;Acc:AT5G03960]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.