CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26720	Canola	cytosol, mitochondrion	94.82	94.15
Bra025690.1-P	Field mustard	cytosol, mitochondrion	94.64	93.97
CDX83805	Canola	cytosol, mitochondrion	81.43	81.72
AT1G18840.1	Thale cress	cytosol	78.39	76.75
CDX96693	Canola	nucleus	80.54	67.01
PGSC0003DMT400003322	Potato	cytosol	36.43	36.56
Solyc02g087760.2.1	Tomato	nucleus	36.25	36.51
CDX90650	Canola	mitochondrion	6.43	34.95
CDY29016	Canola	mitochondrion	6.25	33.98
CDY41676	Canola	cytosol, plastid	30.71	29.91
CDY67405	Canola	cytosol	30.71	29.71
CDY45197	Canola	nucleus, plastid	30.36	29.16
CDY17427	Canola	cytosol, plastid	28.21	27.87
CDY04137	Canola	cytosol, plastid	27.86	27.71
CDY04138	Canola	cytosol, plastid	27.5	27.45
CDY03037	Canola	cytosol	28.21	27.34
CDX73724	Canola	mitochondrion	6.25	26.92
CDY29768	Canola	cytosol	7.32	24.55
CDX78003	Canola	mitochondrion	6.61	24.34
CDY39317	Canola	cytosol	25.54	23.56
CDY53440	Canola	mitochondrion	12.14	23.45
CDY46537	Canola	cytosol, mitochondrion	12.14	23.45
CDY49085	Canola	cytosol	25.36	23.16
CDY50677	Canola	nucleus	14.11	21.47
CDY43103	Canola	cytosol	13.75	20.92
CDY36861	Canola	nucleus	13.93	20.86
CDX85648	Canola	nucleus	14.46	20.51
CDY45643	Canola	cytosol	11.79	20.25
CDY67178	Canola	cytosol, mitochondrion	13.75	19.85
CDY68636	Canola	cytosol	13.75	19.79
CDX91120	Canola	nucleus	13.21	19.73
CDX75883	Canola	cytosol	13.21	19.73
CDX92076	Canola	cytosol	13.57	19.64
CDY64325	Canola	cytosol	13.04	19.57
CDX82400	Canola	cytosol	13.04	19.57
CDX70505	Canola	nucleus	15.36	19.28
CDX78523	Canola	nucleus	15.36	19.28
CDX98994	Canola	mitochondrion	11.79	18.64
CDX70019	Canola	cytosol, mitochondrion	11.61	18.36
CDX78285	Canola	plastid	11.25	18.31
CDY30233	Canola	mitochondrion	12.32	17.78
CDY41368	Canola	mitochondrion, plastid	13.21	17.62
CDY72577	Canola	cytosol, mitochondrion	9.11	17.59
CDY00253	Canola	plastid	12.32	17.51
CDY47784	Canola	mitochondrion	11.96	17.27
CDX86928	Canola	mitochondrion, plastid	12.14	17.26
CDX98787	Canola	mitochondrion	9.11	17.23
CDY00251	Canola	plastid	12.32	16.79
CDX70272	Canola	cytosol, mitochondrion	8.75	16.72
CDX76341	Canola	mitochondrion, plastid	12.5	16.67
CDY41252	Canola	cytosol, mitochondrion	14.46	16.6
CDX81042	Canola	plastid	11.43	16.54
CDY53133	Canola	nucleus	14.29	16.46
CDY41423	Canola	cytosol, mitochondrion	8.57	16.38
CDX94150	Canola	nucleus	13.21	15.95
CDY41417	Canola	mitochondrion	8.39	15.72
CDX98786	Canola	nucleus	13.21	15.58
CDY04907	Canola	endoplasmic reticulum	8.57	14.33
CDY14162	Canola	endoplasmic reticulum	8.57	14.33
CDY44186	Canola	nucleus, plastid	16.43	12.59
CDX83739	Canola	nucleus	16.61	12.58
CDY29389	Canola	nucleus, plastid	16.79	12.57
CDY62588	Canola	nucleus	16.61	12.55
CDX75112	Canola	cytosol	1.61	6.47

Protein Annotations

EnsemblPlants:CDY19251	EnsemblPlantsGene:GSBRNA2T00006565001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:DUF4005
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	InterPro:NHR_dom	PANTHER:PTHR32295	PANTHER:PTHR32295:SF14	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	PFscan:PS51065	ProteinID:CDY19251	ProteinID:CDY19251.1	SEG:seg
SMART:SM00015	UniParc:UPI0004EDD061	UniProt:A0A078G1R0	MapMan:35.1	:	:

Description

BnaC05g14520DBnaC05g14520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1R0]

Coordinates

chrLK032093:-:602686..606066

Molecular Weight (calculated)

61986.3 Da

IEP (calculated)

9.997

GRAVY (calculated)

-0.784

Length

560 amino acids

Sequence
(BLAST)

001: MGKPARWLKS VLLGKKQSKS SGSKDKERVV NGKEVVVISK IEESDVVSDL PSFGNATVHT SGVGETQTTE HEAVSDDEIQ LPEVQVQPTD SPNAASVVPD
101: DSLSQSDKIM QEIAATTVQA AFRGYLARRA FWALKGIIRL QALIRGHMVR RQAVATLCCV MGIVRLQALA RGREIRHSDI GVEVQRKCPL NHQHLENKLP
201: EDSVVDTHTY LGIKKLTANA FAQKLLASSP NVMPVHLEND SSNTIWLENW SASCFWKPIP QPKKTSVKKT QKKFASNSQK SVRKVPTSNL DNPSDAQTSF
301: ELEKPKRSSF RKFSTSQSAE LPPPPAETPQ VDLEKVKRGL RKVHNPVVES SIQPQEVTQK DIEKPSPGLE EPVNNAFNVE RTDEMAQPEE LKHIHEPLVT
401: NETLDSTLVS QIEENVMVEE KEDVKEERTP KQNNKENPAR KEHKRSGKKD SPVTTTATTQ TTECQESSNV NQNSSPGLPS YMQATKSAKA KLRLQGSSSP
501: KQQVTEKATR RYSLPSSGNN ARVTSDSPKT TRVSNSIGKT GKKTEKPLLN GKATPVEWKR

Best Arabidopsis Sequence Match ( AT1G18840.2 )
(BLAST)

001: MGKPARWLKS VLLGKKPSKS SGSKDKERIV NGKEVVVISK IEESDVVSDL SSIGNAAVYT SGIVETQNLK HEDVSDDEIQ VSEVQPTDSQ DVASVPDDSL
101: SESEKIQQEI AAVTVQAAYR GYLARRAFKI LKGIIRLQAL IRGHMVRRQA VSTLCCVMGI VRLQALARGR EIRHSDIGVE VQRKCHLHHQ PLENKANSVV
201: DTHSYLGINK LTGNAFAQKL LASSPNVLPL SLDNDSSNSI WLENWSASCF WKPVPQPKKA SLRKSQKKFA SNPQIVEAEF ARPKKSVRKV PSSNLDNSSV
301: AQTSSELEKP KRSFRKVSTS QSVEPLPSMD NPQVDLEKVK RGLRKVHNPV VENSIQPQLV PQIAVEKPNG SLEESVNAFD EEKEDEVAET VVQQPEELIQ
401: THTPLGTNES LDSTLVNQIE ESEENVMAEE KEDVKEERTP KQNHKENSAG KENQKSGKKA SSVTATQTAE FQESGNGNQT SSPGIPSYMQ ATKSAKAKLR
501: LQGSSSPRQL GTTEKASRRY SLPSSGNSAK ITSHSPKTRV SNSSGKSGNK TEKTLLSSRE GNGKATPVEW KR

Arabidopsis Description

IQD30At1g18840 [Source:UniProtKB/TrEMBL;Acc:Q501D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.