CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70272	Canola	cytosol, mitochondrion	94.88	94.88
Bra009498.1-P	Field mustard	cytosol, mitochondrion	95.9	73.56
CDY14162	Canola	endoplasmic reticulum	81.91	71.64
CDY04907	Canola	endoplasmic reticulum	81.91	71.64
CDY72577	Canola	cytosol, mitochondrion	67.58	68.28
CDY41417	Canola	mitochondrion	68.94	67.56
AT5G03960.2	Thale cress	cytosol, mitochondrion	78.84	57.18
KRH33197	Soybean	cytosol, mitochondrion	47.1	35.38
VIT_08s0007g05960.t01	Wine grape	cytosol	46.42	32.0
PGSC0003DMT400033127	Potato	cytosol, mitochondrion	43.0	31.11
Solyc04g016480.2.1	Tomato	mitochondrion, nucleus	42.66	30.49
CDX90650	Canola	mitochondrion	10.58	30.1
CDY29016	Canola	mitochondrion	10.24	29.13
VIT_08s0007g05980.t01	Wine grape	cytosol	43.0	27.88
Solyc10g079240.1.1	Tomato	mitochondrion, nucleus	37.54	26.13
CDY29768	Canola	cytosol	14.33	25.15
GSMUA_Achr3P17450_001	Banana	nucleus	36.52	23.83
CDY46537	Canola	cytosol, mitochondrion	23.21	23.45
CDX73724	Canola	mitochondrion	10.24	23.08
CDY53440	Canola	mitochondrion	22.53	22.76
CDY45643	Canola	cytosol	23.55	21.17
CDX91120	Canola	nucleus	26.96	21.07
CDX78285	Canola	plastid	24.57	20.93
CDX70019	Canola	cytosol, mitochondrion	24.91	20.62
CDX98994	Canola	mitochondrion	24.91	20.62
CDX78003	Canola	mitochondrion	10.58	20.39
TraesCS5B01G160400.1	Wheat	cytosol	33.11	20.38
TraesCS5A01G163000.1	Wheat	nucleus	33.11	20.38
CDX85648	Canola	nucleus	27.3	20.25
Os03t0355700-00	Rice	cytosol	31.06	20.18
CDY43103	Canola	cytosol	25.26	20.11
TraesCS5D01G168000.2	Wheat	nucleus	32.76	20.0
Zm00001d029197_P001	Maize	nucleus	32.42	19.96
CDX86928	Canola	mitochondrion, plastid	26.62	19.8
CDY00253	Canola	plastid	26.62	19.8
CDX70505	Canola	nucleus	30.03	19.73
EER94844	Sorghum	cytosol	33.45	19.64
CDX82400	Canola	cytosol	24.91	19.57
CDX92076	Canola	cytosol	25.6	19.38
CDX78523	Canola	nucleus	29.35	19.28
CDX75883	Canola	cytosol	24.57	19.2
CDY47784	Canola	mitochondrion	25.26	19.07
CDY30233	Canola	mitochondrion	25.26	19.07
CDY68636	Canola	cytosol	25.26	19.02
CDY00251	Canola	plastid	26.62	18.98
CDY67178	Canola	cytosol, mitochondrion	24.91	18.81
CDX81042	Canola	plastid	24.57	18.6
CDY41368	Canola	mitochondrion, plastid	25.6	17.86
CDY41252	Canola	cytosol, mitochondrion	27.99	16.8
HORVU5Hr1G050840.5	Barley	cytosol, plastid	31.74	16.73
CDY53133	Canola	nucleus	27.65	16.67
CDX76341	Canola	mitochondrion, plastid	23.89	16.67
CDX94150	Canola	nucleus	26.28	16.59
CDX98786	Canola	nucleus	24.91	15.37
CDY50677	Canola	nucleus	17.75	14.13
PGSC0003DMT400021096	Potato	nucleus	10.58	14.03
CDY36861	Canola	nucleus	17.75	13.9
CDY64325	Canola	cytosol	17.06	13.4
CDX98787	Canola	mitochondrion	11.95	11.82
CDY26720	Canola	cytosol, mitochondrion	16.72	8.69
CDY19251	Canola	cytosol, mitochondrion	16.38	8.57
CDX83805	Canola	cytosol, mitochondrion	15.36	8.06
CDY49085	Canola	cytosol	16.72	7.99
CDY39317	Canola	cytosol	16.38	7.91
CDY41676	Canola	cytosol, plastid	13.65	6.96
CDY03037	Canola	cytosol	13.31	6.75
CDY67405	Canola	cytosol	13.31	6.74
CDY45197	Canola	nucleus, plastid	13.31	6.69
CDX96693	Canola	nucleus	15.36	6.69
CDY04138	Canola	cytosol, plastid	11.95	6.24
CDY04137	Canola	cytosol, plastid	11.95	6.22
CDY44186	Canola	nucleus, plastid	15.36	6.16
CDY29389	Canola	nucleus, plastid	15.02	5.88
CDY17427	Canola	cytosol, plastid	11.26	5.82
CDX83739	Canola	nucleus	14.33	5.68
CDY62588	Canola	nucleus	13.99	5.53
CDX75112	Canola	cytosol	2.05	4.32

Protein Annotations

EnsemblPlants:CDY41423	EnsemblPlantsGene:GSBRNA2T00073015001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF41	PFAM:PF00612	PFscan:PS50096
ProteinID:CDY41423	ProteinID:CDY41423.1	SEG:seg	UniParc:UPI0004EF3A91	UniProt:A0A078HXE5	MapMan:35.2

Description

BnaCnng10590DBnaCnng10590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXE5]

Coordinates

chrLK032497:-:240121..241575

Molecular Weight (calculated)

33642.9 Da

IEP (calculated)

11.559

GRAVY (calculated)

-0.680

Length

293 amino acids

Sequence
(BLAST)

001: MAKRRSWFGW IKRLFICEAK PKSEKPRRLR WVFRRLKLRH QIATPTQETR TLNKATEDQR KHAMYVAIAT AAAAEAAVAA AKAAAEVVRM AENSFTSQHF
101: VKKSSDPNLA AIKIQSVFRA YLARKALRAL KALVRLQAIV RGRAVRRKVS SNKASTSSLI QRKHLSKNKT EIKEELKIPK RSMCNGQNGW DSSALTKEDI
201: KAIWLRKQEG VVKRERMLKY SRSHRERRSP HMLLESLSTP RQRAGVMESW FDDNKKDGDK VSLWSSFVSE ENSKMSSSKK SPLATNQHLL LKY

Best Arabidopsis Sequence Match ( AT5G03960.1 )
(BLAST)

001: MAKRRSWFGW MKRLFICEAK ARAEKPRRLR WVFKRLKLRP QLATCGQETR TLNEATQDQR KHAMNVAIAT AAAAEAAVAA AKAAAEVVRM AGNAFTSQHF
101: VKKLAPNVAA IKIQSAFRAS LARKALRALK ALVRLQAIVR GRAVRRKVSA LLKSSHSNKA STSNIIQRQT ERKHWSNTKS EIKEELQVSN HSLCNSKVKC
201: NGWDSSALTK EDIKAIWLRK QEGVIKRDRM LKYSRSQRER RSPHMLVESL YAKDMGMRSC RLEHWGESKS AKSINSFLIP SEMLVPTKVK LRSLQRQDSG
301: DGQDSPFSFP RRSFSRLEQS ILEDESWFQR SNGFQPYMSV TESAREKMRS LSTPRQRVGI MDSLFDNYKK DGDKVSLWST FVCENSKINN AKKSSLTTYQ
401: HNC

Arabidopsis Description

IQD12IQ-domain 12 [Source:TAIR;Acc:AT5G03960]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.