CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029197_P001	Maize	nucleus	84.37	88.45
Os03t0355700-00	Rice	cytosol	66.53	73.61
TraesCS5A01G163000.1	Wheat	nucleus	66.73	69.96
TraesCS5D01G168000.2	Wheat	nucleus	67.13	69.79
TraesCS5B01G160400.1	Wheat	cytosol	66.33	69.54
HORVU5Hr1G050840.5	Barley	cytosol, plastid	64.93	58.27
GSMUA_Achr3P17450_001	Banana	nucleus	43.49	48.33
CDX70272	Canola	cytosol, mitochondrion	19.84	33.79
CDY41423	Canola	cytosol, mitochondrion	19.64	33.45
CDY72577	Canola	cytosol, mitochondrion	18.24	31.38
PGSC0003DMT400033127	Potato	cytosol, mitochondrion	25.45	31.36
Bra009498.1-P	Field mustard	cytosol, mitochondrion	23.65	30.89
VIT_13s0019g01830.t01	Wine grape	mitochondrion, nucleus	28.86	30.7
Bra028807.1-P	Field mustard	mitochondrion	23.25	30.53
Solyc04g016480.2.1	Tomato	mitochondrion, nucleus	24.25	29.51
KRH33197	Soybean	cytosol, mitochondrion	23.05	29.49
VIT_08s0007g05960.t01	Wine grape	cytosol	24.85	29.18
EES12687	Sorghum	cytosol, mitochondrion	27.25	29.12
AT5G03960.2	Thale cress	cytosol, mitochondrion	23.45	28.96
CDY14162	Canola	endoplasmic reticulum	19.24	28.66
CDY04907	Canola	endoplasmic reticulum	19.24	28.66
KXG40135	Sorghum	cytosol, mitochondrion	23.85	28.61
KRH23930	Soybean	nucleus	26.25	28.48
KRH39865	Soybean	nucleus	26.65	28.36
CDY41417	Canola	mitochondrion	16.83	28.09
KRH29958	Soybean	cytosol, mitochondrion	25.45	27.79
KRH63082	Soybean	cytosol	24.45	27.11
Solyc10g079240.1.1	Tomato	mitochondrion, nucleus	22.85	27.08
VIT_08s0007g05980.t01	Wine grape	cytosol	24.25	26.77
Solyc01g088250.2.1	Tomato	cytosol, plastid	24.05	26.2
KXG21487	Sorghum	cytosol, mitochondrion	25.85	26.17
EES02320	Sorghum	mitochondrion	24.45	25.42
Bra023414.1-P	Field mustard	nucleus	20.04	25.32
CDX85648	Canola	nucleus	20.04	25.32
OQU91764	Sorghum	mitochondrion, plastid	25.05	24.75
PGSC0003DMT400017589	Potato	cytosol, plastid	21.24	24.65
CDX91120	Canola	nucleus	18.04	24.0
AT5G13460.1	Thale cress	nucleus	21.04	23.7
KXG30089	Sorghum	cytosol, mitochondrion, plastid	10.62	23.56
CDX78523	Canola	nucleus	21.04	23.54
CDX70505	Canola	nucleus	20.84	23.32
Bra006201.1-P	Field mustard	nucleus	20.84	23.27
KXG33342	Sorghum	mitochondrion	18.44	23.23
EER93770	Sorghum	cytosol, mitochondrion	21.84	22.24
KXG22374	Sorghum	mitochondrion	17.64	22.06
OQU79535	Sorghum	cytosol, mitochondrion	19.64	21.17
KXG22418	Sorghum	cytosol, plastid	20.84	17.96
OQU93295	Sorghum	plastid	9.82	17.31
PGSC0003DMT400021096	Potato	nucleus	7.62	17.19
KXG30090	Sorghum	mitochondrion	10.22	16.56
KXG33252	Sorghum	cytosol	16.43	14.67
EES11606	Sorghum	nucleus	16.03	9.03

Protein Annotations

Gene3D:1.20.5.190	MapMan:35.2	EntrezGene:8082643	UniProt:C5WZQ8	InterPro:DUF4005	EnsemblPlants:EER94844
ProteinID:EER94844	ProteinID:EER94844.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	ProteinID:KXG39350.1	PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295
PANTHER:PTHR32295:SF41	SMART:SM00015	EnsemblPlantsGene:SORBI_3001G368900	UniParc:UPI0001A8343F	RefSeq:XP_002467846.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:65739329..65741754

Molecular Weight (calculated)

54142.1 Da

IEP (calculated)

11.180

GRAVY (calculated)

-0.573

Length

499 amino acids

Sequence
(BLAST)

001: MDKEKRKRRS WFERIRRLFT SSSDPKQTPK PADKKAKSKR WLPGKLRAQQ SFALPAPAPA TAGAPADQIR QAEDEQSKHA VAVALATAAA AEAAVAAAHA
101: AAHVVRLTGQ PPGVAHVPRQ VQVQEQEHER AAVAIQSAYR GYLARRALRA LKGLVRLQAL IRGQAVRRQT AATLRGLESL MRIQARHRSR AVGVDQHHQA
201: ADDDAQLLRR GRELFAAAAA VHEQQQANKG WDSSILSKEE MSAMTRSKEE AALKRVRALQ YASLHNEKLG LGLRRPPSVS MSRDEADALN QRWSWLEEWV
301: GSQPPFDKDV PVAHQSPYTS TAAAAAGGGA SAKGDDVVDR FGCSARRSFA RPRRTPGRGD GYYDDAAAAA GVGACSPAPA PFPGYMASTA SAKAKFRSMS
401: TPKERSTAGA FDAYSEHCFP FADRLLSPIP SMSPIPSIAS DVGFARSTRP PVAQRSPRVV AKSPMTPVRS RSRRSPGHHS FGSEAALHQL QMEHYTPVR

Best Arabidopsis Sequence Match ( AT5G13460.1 )
(BLAST)

001: MAKKKGLFTV LKRIFISEVN SEKKEKRRKW TFWKLRIKKR LPSITAPPEH RTSHESHEEQ KEEIVSDVGE ISQVSCSRQL DSIEESKGST SPETADLVVQ
101: YQMFLNRQEE VLAATRIQTA FRGHLARKAL RALKGIVKLQ AYIRGRAVRR QAMTTLKCLQ SVVNIQSQVC GKRTQIPGGV HRDYEESNIF NDNILKVDTN
201: GQKRWDDSLL TKEEKEAVVM SKKEASLRRE RIKEYAVTHR KSAESYQKRS NTKWKYWLDE WVDTQLTKSK ELEDLDFSSK TKPKDETLNE KQLKTPRNSS
301: PRRLVNNHRR QVSIGEDEQS PAAVTITTPT YMVATESAKA KSRSLSSPRI RPRSFDTQSE SYSPYKNKLC LTTSMMSEAP SKVRIANNGS NTRPSAYQQR
401: SPGLRGFNIG PLKSCNNNNT LLNDLSINSE RSLPSWNKQS SLR

Arabidopsis Description

IQD11IQ-domain 11 [Source:UniProtKB/TrEMBL;Acc:Q9LYR0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.