CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048352_P001	Maize	mitochondrion	78.09	80.36
Os03t0134800-00	Rice	mitochondrion	66.08	61.72
Bra012855.1-P	Field mustard	mitochondrion	19.08	52.43
CDX90650	Canola	mitochondrion	19.08	52.43
AT3G51380.1	Thale cress	mitochondrion	18.73	51.46
CDY29016	Canola	mitochondrion	18.73	51.46
GSMUA_Achr1P02670_001	Banana	mitochondrion	22.97	45.45
HORVU4Hr1G081190.1	Barley	mitochondrion	58.3	42.42
TraesCS5A01G502100.1	Wheat	cytosol, plastid	57.24	42.19
TraesCS4B01G330700.1	Wheat	mitochondrion	58.66	41.92
TraesCS4D01G327500.1	Wheat	mitochondrion	58.66	41.81
PGSC0003DMT400009431	Potato	mitochondrion	18.73	40.46
CDX73724	Canola	mitochondrion	18.02	39.23
VIT_00s0684g00020.t01	Wine grape	mitochondrion	18.02	37.23
GSMUA_Achr11P...	Banana	mitochondrion	26.15	37.19
CDX78003	Canola	mitochondrion	18.73	34.87
KRH07958	Soybean	mitochondrion	17.31	34.75
Bra036812.1-P	Field mustard	mitochondrion	18.73	34.42
EES12687	Sorghum	cytosol, mitochondrion	22.61	13.7
KXG33342	Sorghum	mitochondrion	18.02	12.88
KXG40135	Sorghum	cytosol, mitochondrion	18.73	12.74
EES02320	Sorghum	mitochondrion	20.49	12.08
KXG30089	Sorghum	cytosol, mitochondrion, plastid	9.54	12.0
EER93770	Sorghum	cytosol, mitochondrion	19.79	11.43
KXG21487	Sorghum	cytosol, mitochondrion	19.79	11.36
OQU79535	Sorghum	cytosol, mitochondrion	18.02	11.02
KXG22374	Sorghum	mitochondrion	15.19	10.78
OQU91764	Sorghum	mitochondrion, plastid	19.08	10.69
EER94844	Sorghum	cytosol	17.31	9.82
KXG22418	Sorghum	cytosol, plastid	13.78	6.74
KXG33252	Sorghum	cytosol	11.31	5.72
EES11606	Sorghum	nucleus	13.07	4.18
KXG30090	Sorghum	mitochondrion	3.89	3.57

Protein Annotations

Gene3D:1.20.5.190	MapMan:35.2	EntrezGene:8085672	UniProt:C5WZ13	ProteinID:EER95556.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	ProteinID:OQU93291.1	ProteinID:OQU93292.1
ProteinID:OQU93293.1	ProteinID:OQU93294.1	EnsemblPlants:OQU93295	ProteinID:OQU93295	ProteinID:OQU93295.1	ProteinID:OQU93296.1
ProteinID:OQU93297.1	ProteinID:OQU93298.1	InterPro:P-loop_NTPase	PFAM:PF00612	PFscan:PS50096	PANTHER:PTHR10699
PANTHER:PTHR10699:SF11	SMART:SM00015	EnsemblPlantsGene:SORBI_3001G514500	SUPFAM:SSF52540	UniParc:UPI0001A8314B	RefSeq:XP_002468558.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:78162706..78168624

Molecular Weight (calculated)

30681.9 Da

IEP (calculated)

12.014

GRAVY (calculated)

-0.481

Length

283 amino acids

Sequence
(BLAST)

001: MARARGLFCL VSPVRGEPSD LHRRRRSSAA CICCVGPHHK PSSGAPDADL SVRLPLISCC SGGEVRGRSS SSATRTPRTP RTPSARRLCG VRSRTPRRGQ
101: VCCFPVASAG PGPAGVARTP RTPARQGPGS AKLGRRRRWF RSARQAGAQT TPRFRFAGRD TAHAGNSNNK SLAEAEMAAA AADEETCSND EYALLCREGF
201: SREDVAAVTI QAYFRGHLAR RAFRALKSLV RIQAVARGAF VRRQAEAAIH CMQAMARLQA RVRARRMLAV AKPEPQEEQL LQS

Best Arabidopsis Sequence Match ( AT3G51380.1 )
(BLAST)

001: MANSKRLFGV VRRKLLRRSQ SRITIIRSSA PETTREEIAA VKIQAFFRGH LARRAFKALK SLVKLQAVAR GVLVRRQARI ALHCMHALAR LQVRVRARQL
101: LSH

Arabidopsis Description

IQD20At3g51380 [Source:UniProtKB/TrEMBL;Acc:Q9SD11]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.