CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015969_P001	Maize	cytosol, mitochondrion, plastid	62.67	28.03
Os02t0299200-01	Rice	cytosol, mitochondrion, nucleus	47.56	22.06
KXG40135	Sorghum	cytosol, mitochondrion	23.56	12.74
EES12687	Sorghum	cytosol, mitochondrion	22.67	10.92
EER94844	Sorghum	cytosol	23.56	10.62
OQU91764	Sorghum	mitochondrion, plastid	23.11	10.3
EER93770	Sorghum	cytosol, mitochondrion	22.22	10.2
OQU93295	Sorghum	plastid	12.0	9.54
KXG21487	Sorghum	cytosol, mitochondrion	20.44	9.33
EES02320	Sorghum	mitochondrion	19.56	9.17
OQU79535	Sorghum	cytosol, mitochondrion	16.44	7.99
KXG33342	Sorghum	mitochondrion	13.78	7.83
KXG22374	Sorghum	mitochondrion	12.89	7.27
KXG33252	Sorghum	cytosol	14.67	5.9
KXG22418	Sorghum	cytosol, plastid	13.78	5.35
KXG30090	Sorghum	mitochondrion	6.22	4.55
EES11606	Sorghum	nucleus	8.44	2.14

Protein Annotations

EnsemblPlants:KXG30089	EnsemblPlantsGene:SORBI_3004G132900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR32295	PANTHER:PTHR32295:SF29	PFAM:PF00612	PFscan:PS50096
ProteinID:KXG30089	ProteinID:KXG30089.1	SEG:seg	UniParc:UPI0007F23278	UniProt:A0A194YPD5	MapMan:35.2

Description

hypothetical protein

Coordinates

chr4:+:20672482..20691277

Molecular Weight (calculated)

24212.2 Da

IEP (calculated)

5.431

GRAVY (calculated)

-0.522

Length

225 amino acids

Sequence
(BLAST)

001: MGKKHAAGGG GWFAAVRKVF RPSSTSSTSG TTSSKDKDKD PLQHGKQDGA VEEEPGEEPE VLLLEHFPAS ETSAEASNDN EGGDAEVVAL TAAVRNGHRL
101: QEDEEEEEEL ADDMERARAL AAAAEAAVAA AEAASRVVRL AALRRLSREE RAAVRIQAYY RGYLVRICAM CTSSACICMP DDLMARGNGQ WRARCTYQTS
201: PTELSKVRFY GAHGTAGGRF RSLFG

Best Arabidopsis Sequence Match ( AT3G49260.1 )
(BLAST)

001: MGKKGSGGWF STVKKKVFKS SPKDSKRENN IGSNNADIWQ QQHDTQEVVS FEHFPAESSP EISHDVESTA STPATNVGDR KHAMAVAIAT AAAAEAAVAA
101: AQAAAKVVRL AGYNRQTEED SAAVLIQSHY RGYLARRALR ALKGLVRLQA LVRGNHVRKQ AQMTMKCMQA LVRVQGRVRA RRLQVAHDRF KKQFEEEEKR
201: SGMEKPNKGF ANLKTEREKP KKLHEVNRTS LYQTQGKEKE RSEGMMKRER ALAYAYTYQR QMQHTNSEEG IGLSSNGPDR NQWAWNWLDH WMSSQPYTGR
301: QTGPGPGPGQ YNPPPYPPFP TAAATTTSDD VSEKTVEMDV TTPTSLKGNI IGLIDREYID LGSYRQGHKQ RKSPTHIPSY MAPTASAKAK VRDQGPTVKL
401: QGTSFMPYWN SSTKNGSVNG SGCDSSSSGG AITTGYPGPR SPNPKSDIRR KPVSPSQSPT GFGKRGWRHD H

Arabidopsis Description

iqd21IQ-domain 21 [Source:UniProtKB/TrEMBL;Acc:F4IWT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.