CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048437_P002	Maize	mitochondrion	82.93	87.12
Os03t0161400-01	Rice	cytosol, mitochondrion	68.27	69.27
TraesCS4A01G028700.1	Wheat	cytosol, mitochondrion	65.38	59.78
HORVU4Hr1G073480.2	Barley	cytosol, mitochondrion	64.66	59.12
TraesCS4D01G275700.3	Wheat	cytosol, mitochondrion	66.11	56.94
TraesCS4B01G277100.2	Wheat	cytosol, mitochondrion	65.14	56.22
GSMUA_Achr4P21190_001	Banana	cytosol	23.8	49.25
OQU91764	Sorghum	mitochondrion, plastid	57.45	47.33
EER93770	Sorghum	cytosol, mitochondrion	46.39	39.39
Solyc09g082560.2.1	Tomato	nucleus	43.99	39.19
PGSC0003DMT400016500	Potato	nucleus	22.84	35.71
OQU79535	Sorghum	cytosol, mitochondrion	37.74	33.91
EES12687	Sorghum	cytosol, mitochondrion	34.62	30.84
KXG21487	Sorghum	cytosol, mitochondrion	33.17	27.99
EES02320	Sorghum	mitochondrion	31.73	27.5
KXG33342	Sorghum	mitochondrion	23.8	25.0
KXG22374	Sorghum	mitochondrion	23.08	24.06
EER94844	Sorghum	cytosol	28.61	23.85
KXG30089	Sorghum	cytosol, mitochondrion, plastid	12.74	23.56
OQU93295	Sorghum	plastid	12.74	18.73
KXG30090	Sorghum	mitochondrion	11.54	15.58
KXG22418	Sorghum	cytosol, plastid	20.67	14.85
KXG33252	Sorghum	cytosol	17.55	13.06
EES11606	Sorghum	nucleus	19.95	9.37

Protein Annotations

EnsemblPlants:KXG40135	EnsemblPlantsGene:SORBI_3001G496700	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF91	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	ProteinID:KXG40135	ProteinID:KXG40135.1	SEG:seg	SMART:SM00015
UniParc:UPI00081ABE82	UniProt:A0A1B6QQE6	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:76661336..76663583

Molecular Weight (calculated)

45195.3 Da

IEP (calculated)

11.075

GRAVY (calculated)

-0.649

Length

416 amino acids

Sequence
(BLAST)

001: MGKAGRWLRS FLSGKKDRPP QQAVEPPKDK RWSFRRPPAA QEGRAAEASW RGVPQEDQDQ HQGPLGFPAP GVEFDQNKHA VAVAVATAAA ADAAVAAAHA
101: AAAVARLSSR GASRMPLPPP CLVEDAAAVR IQATFRGYLA RTALCALRGI VKLQALVRGQ LVRKQANATL RCMQALLAAQ SHLRAQRMLA LHHHDHHHYP
201: TPPRPRQSPQ HPRHRRSYEM DRSCEDNAKI VEVDVGEPVR RSRSAGKDRH PFADHHHYAG RCSPAPSVAT ELMSPRAYSG HFDEFSVANT AQSSPRHEAS
301: EACPGYMANT ESSRAKARSQ SAPRQRTDAL ERLPSRRKGT PPRATAKMQR SSSLAGAAPR GAGHYSSPWS SGARLDVSTA SLKDSECGST SSVLTAATVY
401: SRTRSLVGFE VRRGLY

Best Arabidopsis Sequence Match ( AT4G14750.1 )
(BLAST)

001: MGKTSKWFRS LLTGKKERTK EHIIQSECVF TSSIPGTPKE KRRWSFRRSS ATGPPPPACA ITLKDSPPPP PPPPPPPPLQ QPFVVEIVDN EDEQIKNVSA
101: EEIEEFAAIK IQACYRSHLA RKALRALKGL VKLQALVRGH LVRKQATATL RCMQALITLQ AKAREQRIRM IGGDSTNPRT SIHKTRINNF YHENEENIKI
201: VEMDIQSKMY SPAPSALTEM SPRAYSSHFE DCNSFNTAQS SPQCFSRFKE YYNGDTLSSY DYPLFPNYMA NTQSSKAKAR SQSAPKQRPP EIYEKQMSGR
301: RRSSMEAPRN NGVPRAVRMQ RSSSQLGSNT AKESQQHHHH QYYPWMAIKL DRSNISLMES ECGSTSTVMT NTNYGRHVDV QGNNNMY

Arabidopsis Description

IQD19IQ-domain 19 [Source:TAIR;Acc:AT4G14750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.