Factsheet for TraesCS4A01G028700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G073480.2	Barley	cytosol, mitochondrion	91.65	91.65
TraesCS4D01G275700.3	Wheat	cytosol, mitochondrion	92.75	87.37
TraesCS4B01G277100.2	Wheat	cytosol, mitochondrion	92.53	87.34
Os03t0161400-01	Rice	cytosol, mitochondrion	60.66	67.32
Zm00001d048437_P002	Maize	mitochondrion	58.24	66.92
KXG40135	Sorghum	cytosol, mitochondrion	59.78	65.38
TraesCS2A01G470100.1	Wheat	cytosol, mitochondrion	47.47	49.77
GSMUA_Achr4P21190_001	Banana	cytosol	20.66	46.77
TraesCS5A01G377500.1	Wheat	cytosol	40.66	40.04
Solyc09g082560.2.1	Tomato	nucleus	40.44	39.4
TraesCS5A01G055100.1	Wheat	cytosol, mitochondrion	33.19	37.56
PGSC0003DMT400016500	Potato	nucleus	20.22	34.59
TraesCS1A01G122900.1	Wheat	cytosol, plastid	29.23	29.3
TraesCS3A01G108100.1	Wheat	cytosol, mitochondrion	29.89	29.12
TraesCS1A01G341900.1	Wheat	cytosol	21.32	27.79
TraesCS3A01G275900.1	Wheat	mitochondrion	21.76	26.47
TraesCS7A01G332500.1	Wheat	cytosol, mitochondrion	20.66	21.22
TraesCS5A01G163000.1	Wheat	nucleus	22.2	21.22
TraesCS1A01G357500.3	Wheat	cytosol, mitochondrion, plastid	17.58	13.82
TraesCS5A01G502100.1	Wheat	cytosol, plastid	10.99	13.02
TraesCS3A01G244100.1	Wheat	cytosol, plastid	14.95	12.41
TraesCS2A01G492300.1	Wheat	nucleus	19.56	10.34

Protein Annotations

EnsemblPlants:TraesCS4A01G028700.1	EnsemblPlantsGene:TraesCS4A01G028700	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF91	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	MapMan:35.2	:

Description

No Description!

Coordinates

chr4A:+:21051949..21053583

Molecular Weight (calculated)

48714.2 Da

IEP (calculated)

11.678

GRAVY (calculated)

-0.647

Length

455 amino acids

Sequence
(BLAST)

001: MGRAGRWLRN FLAGGRKDGK RDRPNAEATP GPGPGATPKE KRWSFRRPVA LAPEQPGCGV VPRESADGVG ASRSSATSEA GFDEKKRAVA VAVATATAAD
101: VAGAAAQAAA TVARLSSRKV PHLTPPASLL AEGAAAVRIQ ASFRGYLART ALCALRGIVK LQALVRGQLV RKQAKATLRC MQALLAAQSQ LRAQRMRFLQ
201: VQDHHPHHTP PPRPRPSSQH SRHRLSSYEM DRSSEENVKI VEMDSGDQPA RRGGARGGDR QYSSVEYHHG GGRCSPAPSA MTELSPRASS WHVEDHLSFG
301: TAHSSPRSHS HNASAAMAEP AASDLAFPSY MSNTESSRAK ARSQSAPKQR AAAEALERQP SGRRKGAEHR SVPRGARMQR SSSQQQAGSA PRQSPFFHRP
401: WSSSTSVRLD TSTASLKDSE CGSTTSSVVT AATTVSTVYS RTRSLVGFEV RRALY

Best Arabidopsis Sequence Match ( AT4G14750.1 )
(BLAST)

001: MGKTSKWFRS LLTGKKERTK EHIIQSECVF TSSIPGTPKE KRRWSFRRSS ATGPPPPACA ITLKDSPPPP PPPPPPPPLQ QPFVVEIVDN EDEQIKNVSA
101: EEIEEFAAIK IQACYRSHLA RKALRALKGL VKLQALVRGH LVRKQATATL RCMQALITLQ AKAREQRIRM IGGDSTNPRT SIHKTRINNF YHENEENIKI
201: VEMDIQSKMY SPAPSALTEM SPRAYSSHFE DCNSFNTAQS SPQCFSRFKE YYNGDTLSSY DYPLFPNYMA NTQSSKAKAR SQSAPKQRPP EIYEKQMSGR
301: RRSSMEAPRN NGVPRAVRMQ RSSSQLGSNT AKESQQHHHH QYYPWMAIKL DRSNISLMES ECGSTSTVMT NTNYGRHVDV QGNNNMY

Arabidopsis Description

IQD19IQ-domain 19 [Source:TAIR;Acc:AT4G14750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.