Factsheet for TraesCS4D01G275700.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G028700.1	Wheat	cytosol, mitochondrion	87.37	92.75
TraesCS4B01G277100.2	Wheat	cytosol, mitochondrion	92.55	92.74
HORVU4Hr1G073480.2	Barley	cytosol, mitochondrion	85.51	90.77
Os03t0161400-01	Rice	cytosol, mitochondrion	57.97	68.29
Zm00001d048437_P002	Maize	mitochondrion	55.69	67.93
KXG40135	Sorghum	cytosol, mitochondrion	56.94	66.11
TraesCS2D01G470000.1	Wheat	cytosol, mitochondrion	44.31	48.97
GSMUA_Achr4P21190_001	Banana	cytosol	19.25	46.27
TraesCS5D01G387500.1	Wheat	cytosol	38.1	39.74
Solyc09g082560.2.1	Tomato	nucleus	38.1	39.4
PGSC0003DMT400016500	Potato	nucleus	18.84	34.21
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	29.61	30.95
TraesCS3D01G109900.1	Wheat	cytosol, mitochondrion	28.57	29.93
TraesCS1D01G123800.1	Wheat	cytosol	27.74	29.52
TraesCS1D01G344200.1	Wheat	cytosol	20.5	28.61
TraesCS3D01G275900.1	Wheat	mitochondrion	21.12	26.84
TraesCS7D01G341000.1	Wheat	cytosol	20.5	22.35
TraesCS5D01G168000.2	Wheat	nucleus	20.5	20.62
TraesCS1D01G361800.3	Wheat	cytosol, mitochondrion, plastid	16.36	13.64
TraesCS4D01G327500.1	Wheat	mitochondrion	10.56	12.85
TraesCS3D01G247300.1	Wheat	cytosol, plastid	13.87	12.23
TraesCS2D01G492600.1	Wheat	nucleus	18.43	10.34

Protein Annotations

EnsemblPlants:TraesCS4D01G275700.3	EnsemblPlantsGene:TraesCS4D01G275700	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF91	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr4D:-:446651832..446653444

Molecular Weight (calculated)

52453.8 Da

IEP (calculated)

11.767

GRAVY (calculated)

-0.606

Length

483 amino acids

Sequence
(BLAST)

001: MGRAGRWLRN FLAGGRKDGK KDRPHAEATP GPGPGATPKE KRWSFRRPVA LTAEQPGRGV VPREVDSVGA SRSSATSEAG FDEKKRAVAV AVATATAADV
101: ADAAAQAAAT VARLSSRKAP PPGSQLVEEA AAVRIQASFR GYLARAALCA LRGIVKLQAL VRGQLVRKQA KATLRCMQAL LAAQSQLRAQ RMRFLQVQDH
201: HPHHTPPPRP RPSSQHSRHR RSSYEMDRSS EENVKIVEMD SGEQPARRGG ARGGDRQFSS VEYHHGGRSS PAPSAMTELS PRASSWHLED RLSFGTAHSS
301: PHSHSHNAPA AMTEPAGSDL PFPSYMSNTE SSRAKARSQS APRQRAAAEA LERQPSRRKG AEHRSVPRGA RMQRSSSQQQ AGSAPRQSPF FHRPWSSSTS
401: VRLDTSTASL KDSECGSTTS SVVTAATTVS TVYSRTRSLV GFEVTTLHSS ILHIDQLHIM TTAVILISWH ILSFFFQVRR SLY

Best Arabidopsis Sequence Match ( AT4G14750.1 )
(BLAST)

001: MGKTSKWFRS LLTGKKERTK EHIIQSECVF TSSIPGTPKE KRRWSFRRSS ATGPPPPACA ITLKDSPPPP PPPPPPPPLQ QPFVVEIVDN EDEQIKNVSA
101: EEIEEFAAIK IQACYRSHLA RKALRALKGL VKLQALVRGH LVRKQATATL RCMQALITLQ AKAREQRIRM IGGDSTNPRT SIHKTRINNF YHENEENIKI
201: VEMDIQSKMY SPAPSALTEM SPRAYSSHFE DCNSFNTAQS SPQCFSRFKE YYNGDTLSSY DYPLFPNYMA NTQSSKAKAR SQSAPKQRPP EIYEKQMSGR
301: RRSSMEAPRN NGVPRAVRMQ RSSSQLGSNT AKESQQHHHH QYYPWMAIKL DRSNISLMES ECGSTSTVMT NTNYGRHVDV QGNNNMY

Arabidopsis Description

IQD19IQ-domain 19 [Source:TAIR;Acc:AT4G14750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.