Factsheet for TraesCS3D01G247300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G244100.1	Wheat	cytosol, plastid	96.9	96.9
TraesCS3B01G276000.1	Wheat	cytosol, plastid	96.17	96.17
HORVU3Hr1G067750.8	Barley	cytosol, plastid	87.59	86.33
Os01t0716200-01	Rice	nucleus	68.43	65.33
KXG33252	Sorghum	cytosol	60.95	59.75
Zm00001d043655_P002	Maize	mitochondrion	60.77	57.91
TraesCS1D01G361800.3	Wheat	cytosol, mitochondrion, plastid	56.02	53.02
GSMUA_Achr4P30750_001	Banana	mitochondrion	18.8	38.43
GSMUA_Achr2P15790_001	Banana	cytosol	37.41	35.78
VIT_01s0026g01790.t01	Wine grape	cytosol	37.23	35.29
VIT_14s0108g00150.t01	Wine grape	nucleus	36.5	34.6
KRH56937	Soybean	cytosol	36.68	34.3
GSMUA_Achr4P30780_001	Banana	cytosol, mitochondrion	34.67	34.3
KRH03447	Soybean	nucleus	36.13	33.67
KRH54515	Soybean	cytosol	35.22	33.05
KRH63392	Soybean	cytosol	35.04	32.93
VIT_17s0000g05840.t01	Wine grape	endoplasmic reticulum, extracellular	36.86	32.42
Solyc05g007130.2.1	Tomato	cytosol, plastid	30.29	30.13
PGSC0003DMT400045444	Potato	cytosol, plastid	30.47	30.04
KRG99144	Soybean	cytosol, plastid	29.38	29.43
Bra026581.1-P	Field mustard	cytosol	30.66	29.07
KRH45861	Soybean	plastid	28.83	28.88
CDY41676	Canola	cytosol, plastid	30.29	28.87
CDY67405	Canola	cytosol	30.47	28.84
CDY04137	Canola	cytosol, plastid	29.01	28.24
CDY04138	Canola	cytosol, plastid	28.83	28.16
KRH69321	Soybean	cytosol, mitochondrion	28.83	28.06
CDY45197	Canola	nucleus, plastid	29.74	27.96
KRH74806	Soybean	cytosol, plastid	28.65	27.89
CDY03037	Canola	cytosol	29.38	27.85
GSMUA_Achr2P00850_001	Banana	nucleus, plastid	4.56	27.78
Bra017409.1-P	Field mustard	cytosol, plastid	28.47	27.61
Bra024806.1-P	Field mustard	cytosol, plastid	29.2	27.35
CDY17427	Canola	cytosol, plastid	28.28	27.34
CDY39317	Canola	cytosol	28.47	25.7
AT2G02790.1	Thale cress	cytosol	29.01	25.0
CDY49085	Canola	cytosol	27.37	24.47
Bra019653.1-P	Field mustard	cytosol	27.92	24.36
AT1G14380.1	Thale cress	cytosol	29.38	24.25
TraesCS1D01G344200.1	Wheat	cytosol	13.32	21.1
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	17.7	21.0
TraesCS3D01G275900.1	Wheat	mitochondrion	13.32	19.21
TraesCS3D01G109900.1	Wheat	cytosol, mitochondrion	15.51	18.44
TraesCS7D01G341000.1	Wheat	cytosol	14.78	18.28
TraesCS5D01G168000.2	Wheat	nucleus	15.69	17.92
TraesCS1D01G123800.1	Wheat	cytosol	14.6	17.62
TraesCS2D01G470000.1	Wheat	cytosol, mitochondrion	13.5	16.93
TraesCS5D01G387500.1	Wheat	cytosol	13.5	15.98
TraesCS4D01G275700.3	Wheat	cytosol, mitochondrion	12.23	13.87
TraesCS2D01G492600.1	Wheat	nucleus	18.8	11.96
TraesCS4D01G327500.1	Wheat	mitochondrion	7.12	9.82

Protein Annotations

EnsemblPlants:TraesCS3D01G247300.1	EnsemblPlantsGene:TraesCS3D01G247300	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR32295
PANTHER:PTHR32295:SF42	PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015
SUPFAM:SSF52540	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:346354705..346360348

Molecular Weight (calculated)

60760.2 Da

IEP (calculated)

10.513

GRAVY (calculated)

-0.734

Length

548 amino acids

Sequence
(BLAST)

001: MGKSPAKWIK SVLLGKKSTK SNSTKPKDLP AKAANSNGYT AGKEPESSDN SPLISEPVLV SSHNVSEISN LPNGRAIENM VRVGSDTQIS PEKLREELAA
101: VKAQAAFRGY LARRAFRALK GIIRLQALIR GHLVRRQAVS TLHATWLIVK FQALVRGRNV RISSAAMQLA VKFGQHKYGG DKSSDAWKEK LSSHPYVRKL
201: LYSPVLVQAL HVQYDETNPN SAHNWLERWT ISCIWKPVSK PKIVTDGKPQ VRRASYAMET HSAKLKRNVR KSSTATVETQ ANTVEPEKWK RNPRKFNGSP
301: ADSVPDSQLS ELEKVKRNLK KAANSMAEAS KISTKADVSK VPNSIADELK ILGSMAEPSK KSSKLNGISD HQDSECEKAL ESTREALFPL ETQDSHSGNL
401: LENSNIDKLV PDIKYDLEAS FLGDKVNEPT TVAQADEVMP LQNLDNGYDI IERKEATRSK EEPLPNGSLK TKRRSSFSNS EYPESGTKNT PVPSRKPSYM
501: APTESLKAKL RGPPRLDSDL PVDKNAFTRR QSLPSAANNR GIKTEWRR

Best Arabidopsis Sequence Match ( AT1G14380.2 )
(BLAST)

001: MGKTPGKWIK TLLLGKKSPK SNSDNRSQKL KSAKKEELVE SVTEDLSNLT VDPPVVSSQP VPASTAQNVV SPINGDESKD NLESRNDLGE VELEQAAIKV
101: QATFRAHQAR RAFRTLKGII RLQAVIRGHL VRRQAIATYS CIWGIVKFQA LVRGQKARSS DIAIQFQKKH MEASDSEVLQ SSTCSWMDNP TKFVFVDKLL
201: ASSPTALPLK IQYGPEEPNS AKVWLERWTQ LQVWSSGSRV PRIEIPKSQS KKRNYQAVVE AEKKRPKRSI KKPSGTTSGT GPSRFTAERN KPKRNVRKAS
301: TLSKDPLRNE SDKANHNSRK SRSGSKEGSP LEIKDEKPSP SLKRSSLSNG SKKATLRSAE KKKKDIPDSS VQIQPEGKVS ENVLEEGDNI ESSGKEKDTG
401: DSVQIESEGK VLEGGDNIEF GEKEKDKADA VPIEFDIVKD EKSPVLDRTE EDELKTAETS DKAEALKCAD VKVSSENGNV GSDNTKQSEK RALLPANIDK
501: QDDGLTLSGR KIPSYMAPTA SAKARVKGEA SPRFAQAKTE INGALRRHSL PSPANGKLST TTMSPRAQKL LLASAKGSMN GDKSFTSSKD ITHKSTRTDW
601: KR

Arabidopsis Description

IQD28At1g14380 [Source:UniProtKB/TrEMBL;Acc:Q8GZ87]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.