Factsheet for VIT_01s0026g01790.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0108g00150.t01	Wine grape	nucleus	51.04	51.04
KRH56937	Soybean	cytosol	48.1	47.44
KRH03447	Soybean	nucleus	47.92	47.11
VIT_17s0000g05840.t01	Wine grape	endoplasmic reticulum, extracellular	50.35	46.71
KRH63392	Soybean	cytosol	45.67	45.28
KRH54515	Soybean	cytosol	45.5	45.03
GSMUA_Achr8P26180_001	Banana	mitochondrion	38.75	42.67
GSMUA_AchrUn_...	Banana	mitochondrion	35.29	40.32
KXG22418	Sorghum	cytosol, plastid	39.27	39.21
Os05t0535900-01	Rice	cytosol	38.75	39.02
Zm00001d038838_P001	Maize	mitochondrion	38.41	38.68
Zm00001d011138_P003	Maize	cytosol, plastid	38.58	37.73
TraesCS3B01G276000.1	Wheat	cytosol, plastid	35.64	37.59
TraesCS3D01G247300.1	Wheat	cytosol, plastid	35.29	37.23
TraesCS3A01G244100.1	Wheat	cytosol, plastid	35.29	37.23
TraesCS1A01G357500.3	Wheat	cytosol, mitochondrion, plastid	37.2	37.13
KXG33252	Sorghum	cytosol	35.47	36.67
TraesCS1B01G374100.2	Wheat	cytosol, mitochondrion	36.51	36.44
TraesCS1D01G361800.3	Wheat	cytosol, mitochondrion, plastid	36.51	36.44
Os01t0716200-01	Rice	nucleus	36.16	36.41
HORVU3Hr1G067750.8	Barley	cytosol, plastid	34.08	35.43
HORVU1Hr1G080360.4	Barley	mitochondrion	35.99	35.31
Zm00001d043655_P002	Maize	mitochondrion	34.78	34.96
VIT_00s0684g00020.t01	Wine grape	mitochondrion	6.75	28.47
VIT_05s0020g03980.t01	Wine grape	cytosol	19.55	24.35
VIT_16s0100g00620.t01	Wine grape	cytosol	14.01	24.32
VIT_11s0016g03030.t01	Wine grape	cytosol	18.17	24.14
VIT_09s0002g03360.t01	Wine grape	cytosol, mitochondrion	16.78	24.13
VIT_08s0007g05960.t01	Wine grape	cytosol	17.47	23.76
VIT_13s0019g01830.t01	Wine grape	mitochondrion, nucleus	19.03	23.45
VIT_02s0025g04120.t01	Wine grape	mitochondrion	19.55	22.87
VIT_08s0007g05980.t01	Wine grape	cytosol	16.44	21.02
VIT_14s0030g01880.t01	Wine grape	nucleus	14.01	20.72
VIT_18s0001g13870.t01	Wine grape	nucleus	21.11	15.4

Protein Annotations

EntrezGene:100267340	wikigene:100267340	MapMan:35.1	EMBL:AM452792	ProteinID:CAN72165	ProteinID:CAN72165.1
ProteinID:CBI32003	ProteinID:CBI32003.3	ncoils:Coil	UniProt:D7TND0	InterPro:DUF4005	EMBL:FN596002
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100267340
wikigene:LOC100267340	PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF48
SMART:SM00015	TIGR:TC63074	UniParc:UPI0001982B05	ArrayExpress:VIT_01s0026g01790	EnsemblPlantsGene:VIT_01s0026g01790	EnsemblPlants:VIT_01s0026g01790.t01
unigene:Vvi.424	RefSeq:XP_002271193	RefSeq:XP_002271193.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:11028943..11033705

Molecular Weight (calculated)

63592.1 Da

IEP (calculated)

10.711

GRAVY (calculated)

-0.869

Length

578 amino acids

Sequence
(BLAST)

001: MGKSPGKWIK GLLFGKKSSK SNLSKGREIS KHASKGDALV CAKVPASDLT VDAPLTSLPV PLTTARNGVV SDSEKGTASR LPNDGVILSS SKENGDTETI
101: MNLGLSKDPE RIRHEQAATK AQAAFRGYLA RRAFRTLKGI IRLQALGRGR LVRRQAIATL CCVQGIVKFQ ALVRGQSVRH SNIGTEVHEK LSARKFPDAK
201: CSNSFGLQTS NQAEKLSKNV FVCTLLASSP TSMPLHLQYG PGEPNSAWDW LERWTKSHFW EPLTKPKKII DSKSQKKRGT SQTVETDRSR PKRSVRKATS
301: AKFENGSTQS TLESDKPKRN LRKVSSHPVD SVQEHPKNAT EKTKSKLRKN LKSTSDASDQ LEVKAEKPKQ SLRKSSSAAS DAPEQGTGDS LKKIKKDMAV
401: TVSKQSDIET SLKPPAENEL VDNVHDHTLA DLQCVENNGK SENIPEANKD MSYKDNDISN DDQKTSQRRA SLPGKHDYQE NGLHNTPRLP SYMAATESAK
501: AKLRALSSPR FGQDEADKNG ITRRHSLPSS STNGKLSSWS PRAQRLVQAS GKGVFRSDRS LMSSRDGSEK LLQPEWRR

Best Arabidopsis Sequence Match ( AT1G14380.7 )
(BLAST)

001: MGKTPGKWIK TLLLGKKSPK SNSDNRSQKL KSAKKEELVE SVTEDLSNLT VDPPVVSSQP VPASTAQNVV SPINGDESKD NLESRNDLGE VELEQAAIKV
101: QATFRAHQAR RAFRTLKGII RLQAVIRGHL VRRQAIATYS CIWGIVKFQA LVRGQKARSS DIAIQFQKKH MEASDSEVLQ SSTCSWMDNP TKFVFVDKLL
201: ASSPTALPLK IQYGPEEPNS AKVWLERWTQ LQVWSSGSRV PRIEIPKSQS KKRNYQAVVE AEKKRPKRSI KKPSGTTSGT GPSRFTAERN KPKRNVRKAS
301: TLSKDPLRNE SDKANHNSRK SRSGSKEGSP LEIKDEKPSP SLKRSSLSNG SKKATLRSAE KKKKDIPDSS VQIQPEGKVS ENVLEGGDNI EFGEKEKDKA
401: DAVPIEFDIV KDEKSPVLDR TEEDELKTAE TSDKAEALKC ADVKVSSENG NVGSDNTKQS EKRALLPANI DKQDDGLTLS GRKIPSYMAP TASAKARVKG
501: EASPRFAQAK TEINGALRRH SLPSPANGKL STTTMSPRAQ KLLLASAKGS MNGDKSFTSS KDITHKSTRT DWKR

Arabidopsis Description

IQD28At1g14380 [Source:UniProtKB/TrEMBL;Acc:Q8GZ87]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.