Factsheet for VIT_13s0019g01830.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39865	Soybean	nucleus	59.49	59.49
KRH23930	Soybean	nucleus	58.21	59.35
KRH29958	Soybean	cytosol, mitochondrion	53.09	54.49
Solyc01g088250.2.1	Tomato	cytosol, plastid	52.24	53.49
KRH63082	Soybean	cytosol	51.17	53.33
PGSC0003DMT400017589	Potato	cytosol, plastid	46.48	50.7
Bra023414.1-P	Field mustard	nucleus	39.45	46.84
CDX85648	Canola	nucleus	39.45	46.84
VIT_08s0007g05960.t01	Wine grape	cytosol	42.22	46.59
AT5G13460.1	Thale cress	nucleus	43.28	45.82
CDX78523	Canola	nucleus	42.64	44.84
Bra006201.1-P	Field mustard	nucleus	42.43	44.52
CDX70505	Canola	nucleus	42.22	44.39
CDX91120	Canola	nucleus	34.54	43.2
VIT_08s0007g05980.t01	Wine grape	cytosol	40.09	41.59
GSMUA_Achr3P17450_001	Banana	nucleus	33.26	34.74
VIT_00s0684g00020.t01	Wine grape	mitochondrion	9.38	32.12
TraesCS5A01G163000.1	Wheat	nucleus	31.13	30.67
TraesCS5D01G168000.2	Wheat	nucleus	30.92	30.21
TraesCS5B01G160400.1	Wheat	cytosol	30.49	30.04
Os03t0355700-00	Rice	cytosol	28.78	29.93
VIT_09s0002g03360.t01	Wine grape	cytosol, mitochondrion	25.37	29.6
Zm00001d029197_P001	Maize	nucleus	29.64	29.2
EER94844	Sorghum	cytosol	30.7	28.86
VIT_11s0016g03030.t01	Wine grape	cytosol	26.01	28.05
VIT_05s0020g03980.t01	Wine grape	cytosol	27.72	28.02
VIT_02s0025g04120.t01	Wine grape	mitochondrion	28.36	26.92
HORVU5Hr1G050840.5	Barley	cytosol, plastid	30.06	25.36
VIT_14s0030g01880.t01	Wine grape	nucleus	18.98	22.76
VIT_16s0100g00620.t01	Wine grape	cytosol	14.93	21.02
VIT_14s0108g00150.t01	Wine grape	nucleus	23.88	19.38
VIT_01s0026g01790.t01	Wine grape	cytosol	23.45	19.03
VIT_17s0000g05840.t01	Wine grape	endoplasmic reticulum, extracellular	22.81	17.18
VIT_18s0001g13870.t01	Wine grape	nucleus	20.9	12.37

Protein Annotations

EntrezGene:100256816	wikigene:100256816	MapMan:35.1	EMBL:AM469701	ProteinID:CAN83552	ProteinID:CAN83552.1
ProteinID:CCB44586	ProteinID:CCB44586.1	InterPro:DUF4005	UniProt:F6GXA0	EMBL:FN594963	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100256816	wikigene:LOC100256816	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF35	SMART:SM00015	TIGR:TC61790	UniParc:UPI0001984753
ArrayExpress:VIT_13s0019g01830	EnsemblPlantsGene:VIT_13s0019g01830	EnsemblPlants:VIT_13s0019g01830.t01	unigene:Vvi.16207	RefSeq:XP_002268819	RefSeq:XP_002268819.1
RefSeq:XP_010645701.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13_random:-:3189921..3192397

Molecular Weight (calculated)

53291.7 Da

IEP (calculated)

10.624

GRAVY (calculated)

-0.740

Length

469 amino acids

Sequence
(BLAST)

001: MAKRRSWFHI VKRFFIPETH PKTEKEKRRR WLFGRLKIKR LASIEAPPSP VKERVLSEAE EEQSKHALTV AIATAAAAEA AVAAARAAAE VVRLTTTPQA
101: TEECDKKTEE TPPVEIPIIA TPLPDLHHES EDQVLAAIKI QTAFRGYLAR KALRALKGLV RLQAIVRGRA VRRQAITTLK CLQSIVNIQS QVCARRCQKA
201: EECVNCDDIK QLQDLKDKVI KMDSNSQRRW DDSLLSKEEG NALFLSKKEA VMKRERIKEY TFGQRERKSI HKPAESEQNK LNGRWRYWLE KWVDTQVAKR
301: EELPSLDTVW SSNARSREEF PGKQHTPRNN QRQYHIEGLG SPVLVPRRSF HHRKERSIGD ENSFSSPPIP TYMAATESAK AKVRSVSSPK LRPGSLDTFS
401: DSNSPHKNRL SLISSISSEA TNCSRISKPG MPQQRSPSLR GPGPIKSSRS TKELSFDSEC SLLNWDRRL

Best Arabidopsis Sequence Match ( AT5G13460.1 )
(BLAST)

001: MAKKKGLFTV LKRIFISEVN SEKKEKRRKW TFWKLRIKKR LPSITAPPEH RTSHESHEEQ KEEIVSDVGE ISQVSCSRQL DSIEESKGST SPETADLVVQ
101: YQMFLNRQEE VLAATRIQTA FRGHLARKAL RALKGIVKLQ AYIRGRAVRR QAMTTLKCLQ SVVNIQSQVC GKRTQIPGGV HRDYEESNIF NDNILKVDTN
201: GQKRWDDSLL TKEEKEAVVM SKKEASLRRE RIKEYAVTHR KSAESYQKRS NTKWKYWLDE WVDTQLTKSK ELEDLDFSSK TKPKDETLNE KQLKTPRNSS
301: PRRLVNNHRR QVSIGEDEQS PAAVTITTPT YMVATESAKA KSRSLSSPRI RPRSFDTQSE SYSPYKNKLC LTTSMMSEAP SKVRIANNGS NTRPSAYQQR
401: SPGLRGFNIG PLKSCNNNNT LLNDLSINSE RSLPSWNKQS SLR

Arabidopsis Description

IQD11IQ-domain 11 [Source:UniProtKB/TrEMBL;Acc:Q9LYR0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.